Literature DB >> 26407885

Sample dilution and bacterial community composition influence empirical leucine-to-carbon conversion factors in surface waters of the world's oceans.

Eva Teira1, Víctor Hernando-Morales2, Francisco M Cornejo-Castillo3, Laura Alonso-Sáez4, Hugo Sarmento5, Joaquín Valencia-Vila6, Teresa Serrano Catalá7, Marta Hernández-Ruiz2, Marta M Varela6, Isabel Ferrera3, Xosé Anxelu Gutiérrez Morán8, Josep M Gasol3.   

Abstract

The transformation of leucine incorporation rates to prokaryotic carbon production rates requires the use of either theoretical or empirically determined conversion factors. Empirical leucine-to-carbon conversion factors (eCFs) vary widely across environments, and little is known about their potential controlling factors. We conducted 10 surface seawater manipulation experiments across the world's oceans, where the growth of the natural prokaryotic assemblages was promoted by filtration (i.e., removal of grazers [F treatment]) or filtration combined with dilution (i.e., also relieving resource competition [FD treatment]). The impact of sunlight exposure was also evaluated in the FD treatments, and we did not find a significant effect on the eCFs. The eCFs varied from 0.09 to 1.47 kg C mol Leu(-1) and were significantly lower in the FD than in the F samples. Also, changes in bacterial community composition during the incubations, as assessed by automated ribosomal intergenic spacer analysis (ARISA), were more pronounced in the FD than in the F treatments, compared to unmanipulated controls. Thus, we discourage the common procedure of diluting samples (in addition to filtration) for eCF determination. The eCFs in the filtered treatment were negatively correlated with the initial chlorophyll a concentration, picocyanobacterial abundance (mostly Prochlorococcus), and the percentage of heterotrophic prokaryotes with high nucleic acid content (%HNA). The latter two variables explained 80% of the eCF variability in the F treatment, supporting the view that both Prochlorococcus and HNA prokaryotes incorporate leucine in substantial amounts, although this results in relatively low carbon production rates in the oligotrophic ocean.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26407885      PMCID: PMC4651073          DOI: 10.1128/AEM.02454-15

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  20 in total

1.  High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters.

Authors:  Mikhail V Zubkov; Bernhard M Fuchs; Glen A Tarran; Peter H Burkill; Rudolf Amann
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

2.  Turnover of protein in growing and non-growing populations of Escherichia coli.

Authors:  J MANDELSTAM
Journal:  Biochem J       Date:  1958-05       Impact factor: 3.857

3.  Viral and flagellate control of prokaryotic production and community structure in offshore Mediterranean waters.

Authors:  Osana Bonilla-Findji; Gerhard J Herndl; Jean-Pierre Gattuso; Markus G Weinbauer
Journal:  Appl Environ Microbiol       Date:  2009-05-22       Impact factor: 4.792

4.  Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities.

Authors:  Alban Ramette
Journal:  Appl Environ Microbiol       Date:  2009-02-06       Impact factor: 4.792

5.  Empirical leucine-to-carbon conversion factors for estimating heterotrophic bacterial production: seasonality and predictability in a temperate coastal ecosystem.

Authors:  Alejandra Calvo-Díaz; Xosé Anxelu G Morán
Journal:  Appl Environ Microbiol       Date:  2009-03-20       Impact factor: 4.792

6.  Experimental evaluation of conversion factors for the [h]thymidine incorporation assay of bacterial secondary productivity.

Authors:  M F Coveney; R G Wetzel
Journal:  Appl Environ Microbiol       Date:  1988-08       Impact factor: 4.792

7.  Light conditions affect the measurement of oceanic bacterial production via leucine uptake.

Authors:  X A Morán; R Massana; J M Gasol
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

8.  Light dependence of [3H]leucine incorporation in the oligotrophic North Pacific ocean.

Authors:  Matthew J Church; Hugh W Ducklow; David M Karl
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

9.  Bacterioplankton cell growth and macromolecular synthesis in seawater cultures during the North Atlantic Spring Phytoplankton Bloom, May, 1989.

Authors:  H W Ducklow; D L Kirchman; H L Quinby
Journal:  Microb Ecol       Date:  1992-09       Impact factor: 4.552

10.  Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems.

Authors:  D Kirchman; E K'nees; R Hodson
Journal:  Appl Environ Microbiol       Date:  1985-03       Impact factor: 4.792

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  2 in total

1.  Unveiling the role and life strategies of viruses from the surface to the dark ocean.

Authors:  Elena Lara; Dolors Vaqué; Elisabet Laia Sà; Julia A Boras; Ana Gomes; Encarna Borrull; Cristina Díez-Vives; Eva Teira; Massimo C Pernice; Francisca C Garcia; Irene Forn; Yaiza M Castillo; Aida Peiró; Guillem Salazar; Xosé Anxelu G Morán; Ramon Massana; Teresa S Catalá; Gian Marco Luna; Susana Agustí; Marta Estrada; Josep M Gasol; Carlos M Duarte
Journal:  Sci Adv       Date:  2017-09-06       Impact factor: 14.136

2.  Empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (50-2000 m) shaped by bacterial community composition and optical signature of DOM.

Authors:  C Pamela Orta-Ponce; Tamara Rodríguez-Ramos; Mar Nieto-Cid; Eva Teira; Elisa Guerrero-Feijóo; Antonio Bode; Marta M Varela
Journal:  Sci Rep       Date:  2021-12-21       Impact factor: 4.379

  2 in total

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