Literature DB >> 26405542

Detection of natural antisense non-coding RNAs transcribed from Ncam1 in mice tissues at several developmental stages.

Mitsuru Chiba1.   

Abstract

Natural antisense ribonucleic acids (RNAs) are transcribed from a large number of genes in various species, including humans and mice. The expression of neural cell adhesion molecule 1 (Ncam1) antisense non-coding RNAs (ncRNAs) in mice has been demonstrated by functional annotation of the mammalian genome project, but the localization of Ncam1 antisense ncRNAs has not been reported in mice tissues. In the present study, the localization of Ncam1 antisense ncRNAs was examined in tissues at several developmental stages by in situ hybridization. At days 14 and 17 of embryonic development, Ncam1 antisense ncRNAs were found in the heart, liver, lung, kidney, thymus and nerve regions including the brain (cerebral cortex, olfactory bulb, hippocampus and cerebellum) and spinal cord. In newborn mice, Ncam1 antisense ncRNAs were detected in the brain, kidney and thymus, but was not detected in other tissues. In 8-week-old mice, Ncam1 antisense ncRNAs were detected in the lung, kidney, thymus, pancreas, cornea, stomach and nerve regions including the brain. These results indicate that Ncam1 antisense ncRNAs are expressed in mice tissues. Notably, Ncam1 messenger RNAs (mRNAs), antisense ncRNAs co-localized in the Purkinje cells of the cerebellum and the levels of antisense ncRNAs appeared to be higher than those of mRNAs, suggesting that Ncam1 antisense ncRNAs may regulate the expression of Ncam1 mRNAs in the same cells.

Entities:  

Keywords:  Purkinje cell; embryo; in situ hybridization; natural antisense non-coding RNAs; neural cell adhesion molecule 1

Year:  2015        PMID: 26405542      PMCID: PMC4534824          DOI: 10.3892/br.2015.482

Source DB:  PubMed          Journal:  Biomed Rep        ISSN: 2049-9434


  11 in total

1.  Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

Authors:  Y Okazaki; M Furuno; T Kasukawa; J Adachi; H Bono; S Kondo; I Nikaido; N Osato; R Saito; H Suzuki; I Yamanaka; H Kiyosawa; K Yagi; Y Tomaru; Y Hasegawa; A Nogami; C Schönbach; T Gojobori; R Baldarelli; D P Hill; C Bult; D A Hume; J Quackenbush; L M Schriml; A Kanapin; H Matsuda; S Batalov; K W Beisel; J A Blake; D Bradt; V Brusic; C Chothia; L E Corbani; S Cousins; E Dalla; T A Dragani; C F Fletcher; A Forrest; K S Frazer; T Gaasterland; M Gariboldi; C Gissi; A Godzik; J Gough; S Grimmond; S Gustincich; N Hirokawa; I J Jackson; E D Jarvis; A Kanai; H Kawaji; Y Kawasawa; R M Kedzierski; B L King; A Konagaya; I V Kurochkin; Y Lee; B Lenhard; P A Lyons; D R Maglott; L Maltais; L Marchionni; L McKenzie; H Miki; T Nagashima; K Numata; T Okido; W J Pavan; G Pertea; G Pesole; N Petrovsky; R Pillai; J U Pontius; D Qi; S Ramachandran; T Ravasi; J C Reed; D J Reed; J Reid; B Z Ring; M Ringwald; A Sandelin; C Schneider; C A M Semple; M Setou; K Shimada; R Sultana; Y Takenaka; M S Taylor; R D Teasdale; M Tomita; R Verardo; L Wagner; C Wahlestedt; Y Wang; Y Watanabe; C Wells; L G Wilming; A Wynshaw-Boris; M Yanagisawa; I Yang; L Yang; Z Yuan; M Zavolan; Y Zhu; A Zimmer; P Carninci; N Hayatsu; T Hirozane-Kishikawa; H Konno; M Nakamura; N Sakazume; K Sato; T Shiraki; K Waki; J Kawai; K Aizawa; T Arakawa; S Fukuda; A Hara; W Hashizume; K Imotani; Y Ishii; M Itoh; I Kagawa; A Miyazaki; K Sakai; D Sasaki; K Shibata; A Shinagawa; A Yasunishi; M Yoshino; R Waterston; E S Lander; J Rogers; E Birney; Y Hayashizaki
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

2.  Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.

Authors:  Hidenori Kiyosawa; Itaru Yamanaka; Naoki Osato; Shinji Kondo; Yoshihide Hayashizaki
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

3.  Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.

Authors:  Hidenori Kiyosawa; Nathan Mise; Shigeru Iwase; Yoshihide Hayashizaki; Kuniya Abe
Journal:  Genome Res       Date:  2005-03-21       Impact factor: 9.043

4.  Identification of natural antisense transcripts involved in human colorectal cancer development.

Authors:  Keisuke Kohno; Mitsuru Chiba; Soichiro Murata; Sugiru Pak; Kentaro Nagai; Masayoshi Yamamoto; Kazuhiko Yanagisawa; Akihiko Kobayashi; Hiroshi Yasue; Nobuhiro Ohkohchi
Journal:  Int J Oncol       Date:  2010-12       Impact factor: 5.650

5.  Antisense transcripts in the human genome.

Authors:  Ben Lehner; Gary Williams; R Duncan Campbell; Christopher M Sanderson
Journal:  Trends Genet       Date:  2002-02       Impact factor: 11.639

6.  Polysialylated neural cell adhesion molecule promotes remodeling and formation of hippocampal synapses.

Authors:  Alexander Dityatev; Galina Dityateva; Vladimir Sytnyk; Markus Delling; Nicolas Toni; Irina Nikonenko; Dominique Muller; Melitta Schachner
Journal:  J Neurosci       Date:  2004-10-20       Impact factor: 6.167

7.  Inactivation of the N-CAM gene in mice results in size reduction of the olfactory bulb and deficits in spatial learning.

Authors:  H Cremer; R Lange; A Christoph; M Plomann; G Vopper; J Roes; R Brown; S Baldwin; P Kraemer; S Scheff
Journal:  Nature       Date:  1994-02-03       Impact factor: 49.962

Review 8.  In search of antisense.

Authors:  Giovanni Lavorgna; Dvir Dahary; Ben Lehner; Rotem Sorek; Christopher M Sanderson; Giorgio Casari
Journal:  Trends Biochem Sci       Date:  2004-02       Impact factor: 13.807

Review 9.  Regulatory roles of natural antisense transcripts.

Authors:  Mohammad Ali Faghihi; Claes Wahlestedt
Journal:  Nat Rev Mol Cell Biol       Date:  2009-07-29       Impact factor: 94.444

10.  Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues.

Authors:  Anita Grigoriadis; Gavin R Oliver; Austin Tanney; Howard Kendrick; Matt J Smalley; Parmjit Jat; A Munro Neville
Journal:  BMC Genomics       Date:  2009-07-17       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.