Literature DB >> 26396883

Crystal structure of S-(4-methyl-benz-yl) piperidine-dithio-carbamate.

Z A Rahima1, Siti Nadiah Abdul Halim2, Fiona N-F How1.   

Abstract

The title compound, C14H19NS2, crystallizes in the thione form with the presence of a C=S bond. The piperidine ring adopts a chair conformation. The dihedral angle between the essentially planar di-thio-carbamate and p-tolyl fragments is 74.46 (10)°.

Entities:  

Keywords:  crystal structure; di­thio­carbamate; piperidine di­thio­carbamate; substituted di­thio­carbamate

Year:  2015        PMID: 26396883      PMCID: PMC4555435          DOI: 10.1107/S2056989015014462

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis and related structures, see: Nabipour (2011 ▸); Kumar et al. (2013 ▸); Kotresh et al. (2012 ▸). For the various applications of di­thio­carbamates, see: Hogarth (2005 ▸).

Experimental

Crystal data

C14H19NS2 M = 265.42 Monoclinic, a = 6.3081 (4) Å b = 11.2191 (7) Å c = 19.8399 (13) Å β = 96.133 (5)° V = 1396.06 (15) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 100 K 0.4 × 0.2 × 0.1 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▸) T min = 0.666, T max = 0.746 13322 measured reflections 3278 independent reflections 1866 reflections with I > 2σ(I) R int = 0.105

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.114 S = 1.01 3278 reflections 155 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.34 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2007 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: pubICIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015014462/lh5777sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014462/lh5777Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015014462/lh5777Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015014462/lh5777fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as spheres of arbitrary radius. CCDC reference: 975555 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H19NS2F(000) = 568
Mr = 265.42Dx = 1.263 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.3081 (4) ÅCell parameters from 883 reflections
b = 11.2191 (7) Åθ = 3.6–20.8°
c = 19.8399 (13) ŵ = 0.36 mm1
β = 96.133 (5)°T = 100 K
V = 1396.06 (15) Å3Block, colourless
Z = 40.4 × 0.2 × 0.1 mm
Bruker APEXII CCD diffractometer3278 independent reflections
Radiation source: sealed tube1866 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.105
Detector resolution: 8 pixels mm-1θmax = 27.9°, θmin = 2.1°
φ and ω scansh = −8→8
Absorption correction: multi-scan SADABS (Bruker, 2012)k = −14→14
Tmin = 0.666, Tmax = 0.746l = −25→25
13322 measured reflections
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.036P)2 + 0.1195P] where P = (Fo2 + 2Fc2)/3
3278 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.60407 (11)0.46509 (6)0.32887 (4)0.0264 (2)
S20.40927 (14)0.70252 (7)0.35563 (4)0.0347 (2)
N10.3416 (3)0.5804 (2)0.24001 (12)0.0255 (6)
C70.7321 (5)0.5087 (3)0.41139 (15)0.0339 (8)
H7A0.81070.58240.40800.041*
H7B0.62670.52040.44300.041*
C131.0788 (5)0.3979 (3)0.41109 (14)0.0297 (7)
H131.12150.45450.38110.036*
C80.8810 (5)0.4086 (2)0.43476 (14)0.0266 (7)
C60.4390 (4)0.5890 (2)0.30345 (14)0.0240 (7)
C121.2139 (5)0.3046 (3)0.43127 (14)0.0298 (7)
H121.34540.29910.41430.036*
C3−0.0478 (5)0.4953 (3)0.16795 (17)0.0382 (8)
H3A−0.18390.45610.17020.046*
H3B−0.03540.51480.12090.046*
C90.8232 (5)0.3239 (3)0.48066 (15)0.0305 (7)
H90.69210.33010.49790.037*
C141.3055 (5)0.1182 (3)0.49932 (17)0.0429 (9)
H14A1.38900.09760.46330.064*
H14B1.22430.05020.51080.064*
H14C1.39830.14290.53830.064*
C50.1796 (4)0.6661 (3)0.21235 (15)0.0299 (7)
H5A0.20740.68980.16710.036*
H5B0.18530.73680.24070.036*
C10.3454 (5)0.4735 (3)0.19726 (15)0.0305 (7)
H1A0.45740.42010.21600.037*
H1B0.37470.49600.15200.037*
C20.1319 (5)0.4110 (3)0.19406 (16)0.0345 (8)
H2A0.10860.38290.23890.041*
H2B0.13200.34250.16430.041*
C111.1563 (5)0.2185 (3)0.47668 (14)0.0283 (7)
C100.9587 (5)0.2306 (3)0.50101 (14)0.0307 (7)
H100.91660.17480.53160.037*
C4−0.0398 (5)0.6094 (3)0.20983 (16)0.0344 (8)
H4A−0.14660.66480.18990.041*
H4B−0.07160.59130.25550.041*
U11U22U33U12U13U23
S10.0309 (4)0.0220 (4)0.0259 (4)0.0032 (3)0.0012 (3)−0.0015 (3)
S20.0515 (5)0.0223 (4)0.0299 (5)0.0053 (4)0.0030 (4)−0.0025 (3)
N10.0258 (13)0.0230 (13)0.0272 (14)0.0022 (11)0.0009 (11)−0.0022 (11)
C70.0435 (19)0.0309 (18)0.0250 (17)0.0050 (15)−0.0067 (14)−0.0050 (14)
C130.0354 (18)0.0271 (17)0.0255 (17)−0.0063 (14)−0.0015 (14)0.0020 (13)
C80.0323 (17)0.0218 (16)0.0247 (16)−0.0006 (14)−0.0019 (13)−0.0047 (13)
C60.0267 (16)0.0218 (15)0.0243 (16)−0.0014 (13)0.0066 (13)0.0020 (12)
C120.0280 (16)0.0341 (18)0.0271 (17)−0.0025 (15)0.0023 (13)−0.0009 (14)
C30.0307 (17)0.0354 (19)0.047 (2)−0.0068 (14)−0.0010 (15)0.0049 (16)
C90.0315 (17)0.0338 (18)0.0260 (17)−0.0003 (15)0.0016 (13)−0.0018 (14)
C140.048 (2)0.0357 (19)0.041 (2)0.0072 (17)−0.0157 (17)−0.0013 (16)
C50.0329 (17)0.0254 (16)0.0306 (18)0.0045 (14)−0.0009 (14)0.0040 (14)
C10.0332 (17)0.0306 (17)0.0264 (17)0.0035 (15)−0.0022 (13)−0.0069 (14)
C20.0395 (19)0.0282 (17)0.0341 (19)−0.0037 (15)−0.0041 (15)−0.0013 (14)
C110.0303 (17)0.0277 (16)0.0247 (17)−0.0011 (14)−0.0073 (13)−0.0037 (13)
C100.0408 (19)0.0262 (17)0.0240 (17)−0.0052 (15)−0.0017 (14)0.0056 (13)
C40.0304 (17)0.0333 (18)0.039 (2)0.0040 (15)0.0025 (14)0.0084 (15)
S1—C71.814 (3)C9—H90.9300
S1—C61.778 (3)C9—C101.384 (4)
S2—C61.664 (3)C14—H14A0.9600
N1—C61.344 (3)C14—H14B0.9600
N1—C51.466 (3)C14—H14C0.9600
N1—C11.471 (3)C14—C111.504 (4)
C7—H7A0.9700C5—H5A0.9700
C7—H7B0.9700C5—H5B0.9700
C7—C81.505 (4)C5—C41.519 (4)
C13—H130.9300C1—H1A0.9700
C13—C81.384 (4)C1—H1B0.9700
C13—C121.382 (4)C1—C21.513 (4)
C8—C91.392 (4)C2—H2A0.9700
C12—H120.9300C2—H2B0.9700
C12—C111.395 (4)C11—C101.391 (4)
C3—H3A0.9700C10—H100.9300
C3—H3B0.9700C4—H4A0.9700
C3—C21.523 (4)C4—H4B0.9700
C3—C41.524 (4)
C6—S1—C7103.63 (13)C11—C14—H14A109.5
C6—N1—C5122.3 (2)C11—C14—H14B109.5
C6—N1—C1124.4 (2)C11—C14—H14C109.5
C5—N1—C1111.9 (2)N1—C5—H5A109.8
S1—C7—H7A110.5N1—C5—H5B109.8
S1—C7—H7B110.5N1—C5—C4109.5 (2)
H7A—C7—H7B108.7H5A—C5—H5B108.2
C8—C7—S1106.24 (19)C4—C5—H5A109.8
C8—C7—H7A110.5C4—C5—H5B109.8
C8—C7—H7B110.5N1—C1—H1A109.8
C8—C13—H13119.4N1—C1—H1B109.8
C12—C13—H13119.4N1—C1—C2109.4 (2)
C12—C13—C8121.2 (3)H1A—C1—H1B108.2
C13—C8—C7121.1 (3)C2—C1—H1A109.8
C13—C8—C9118.1 (3)C2—C1—H1B109.8
C9—C8—C7120.8 (3)C3—C2—H2A109.5
S2—C6—S1121.57 (17)C3—C2—H2B109.5
N1—C6—S1113.9 (2)C1—C2—C3110.7 (2)
N1—C6—S2124.6 (2)C1—C2—H2A109.5
C13—C12—H12119.4C1—C2—H2B109.5
C13—C12—C11121.1 (3)H2A—C2—H2B108.1
C11—C12—H12119.4C12—C11—C14120.9 (3)
H3A—C3—H3B108.1C10—C11—C12117.5 (3)
C2—C3—H3A109.5C10—C11—C14121.6 (3)
C2—C3—H3B109.5C9—C10—C11121.4 (3)
C2—C3—C4110.8 (3)C9—C10—H10119.3
C4—C3—H3A109.5C11—C10—H10119.3
C4—C3—H3B109.5C3—C4—H4A109.6
C8—C9—H9119.6C3—C4—H4B109.6
C10—C9—C8120.7 (3)C5—C4—C3110.3 (3)
C10—C9—H9119.6C5—C4—H4A109.6
H14A—C14—H14B109.5C5—C4—H4B109.6
H14A—C14—H14C109.5H4A—C4—H4B108.1
H14B—C14—H14C109.5
S1—C7—C8—C1379.9 (3)C6—N1—C1—C2104.9 (3)
S1—C7—C8—C9−99.8 (3)C12—C13—C8—C7−178.5 (3)
N1—C5—C4—C3−57.0 (3)C12—C13—C8—C91.3 (4)
N1—C1—C2—C356.7 (3)C12—C11—C10—C90.5 (4)
C7—S1—C6—S2−6.6 (2)C14—C11—C10—C9179.1 (3)
C7—S1—C6—N1174.4 (2)C5—N1—C6—S1172.6 (2)
C7—C8—C9—C10178.7 (3)C5—N1—C6—S2−6.4 (4)
C13—C8—C9—C10−1.1 (4)C5—N1—C1—C2−61.5 (3)
C13—C12—C11—C14−179.0 (3)C1—N1—C6—S17.5 (3)
C13—C12—C11—C10−0.3 (4)C1—N1—C6—S2−171.5 (2)
C8—C13—C12—C11−0.6 (4)C1—N1—C5—C461.8 (3)
C8—C9—C10—C110.3 (4)C2—C3—C4—C553.9 (3)
C6—S1—C7—C8−178.0 (2)C4—C3—C2—C1−53.9 (3)
C6—N1—C5—C4−105.1 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (6-Meth-oxy-2-oxo-2H-chromen-4-yl)methyl piperidine-1-carbodi-thio-ate.

Authors:  K Mahesh Kumar; M Vinduvahini; N M Mahabhaleshwaraiah; O Kotresh; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23

3.  (3-Oxo-3H-benzo[f]chromen-1-yl)methyl piperidine-1-carbodithio-ate.

Authors:  O Kotresh; K Mahesh Kumar; N M Mahabaleshwaraiah; H K Arunkashi; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.