Literature DB >> 26396873

Crystal structure of di-μ-chlorido-bis(chlorido-{N (1)-phenyl-N (4)-[(pyridin-2-yl-κN)methyl-idene]benzene-1,4-di-amine-κN (4)}mercury(II)).

Md Serajul Haque Faizi1, Elena V Prisyazhnaya2.   

Abstract

The whole mol-ecule of the title complex, [Hg2Cl4(C18H15N3)2], is generated by inversion symmetry. It was synthesized from the pyridine-derived Schiff base N-phenyl-N'-[(pyridin-2-yl)methyl-idene]benzene-1,4-di-amine (PPMBD). The five-coordinated Hg(2+) ions have a distorted square-pyramidal environment defined by two N atoms, viz. the imine and the other pyridyl [Hg-N = 2.467 (6) and 2.310 (6) Å, respectively] belonging to the bidentate imino-pyridine ligand, and three Cl atoms [Hg-Cl = 2.407 (2), 2.447 (2) and 3.031 (2) Å]. The longest Hg-Cl bond is bridging about the inversion centre. In the ligand, the central ring and pyridine ring are oriented at a dihedral angle of 8.1 (4)°, while the planes of the pyridine ring and the terminal phenyl ring are oriented at a dihedral angle of 53.8 (4)°. In the crystal, mol-ecules are linked by N-H⋯Cl and C-H⋯Cl hydrogen bonds, forming sheets parallel to (001).

Entities:  

Keywords:  Schiff base; bidentate ligand; crystal structure; hydrogen bonding; inversion symmetry; mercury(II)

Year:  2015        PMID: 26396873      PMCID: PMC4555402          DOI: 10.1107/S2056989015015790

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For applications of pyridincarbaldehyde and related structures, see: Baul et al. (2004 ▸); Das et al. (2013 ▸); Faizi & Sen (2014 ▸); Hughes & Prince (1978 ▸); Jursic et al. (2002 ▸); Kasselouri et al. (1993 ▸); Mandal et al. (2012 ▸); Motswainyana et al. (2013 ▸); Song et al. (2011 ▸).

Experimental

Crystal data

[Hg2Cl4(C18H15N3)2] M = 1089.64 Monoclinic, a = 11.7507 (14) Å b = 8.9026 (11) Å c = 17.050 (2) Å β = 90.194 (8)° V = 1783.6 (4) Å3 Z = 2 Mo Kα radiation μ = 8.93 mm−1 T = 100 K 0.18 × 0.15 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▸) T min = 0.296, T max = 0.414 19428 measured reflections 4451 independent reflections 2451 reflections with I > 2σ(I) R int = 0.098

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.124 S = 0.96 4451 reflections 220 parameters 1 restraint H-atom parameters constrained Δρmax = 1.78 e Å−3 Δρmin = −1.13 e Å−3

Data collection: SMART (Bruker, 2003 ▸); cell refinement: SAINT (Bruker, 2003 ▸); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL2014 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015015790/su5192sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015015790/su5192Isup2.hkl Click here for additional data file. x y z . DOI: 10.1107/S2056989015015790/su5192fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The unlabelled atoms are related to the labelled atoms by inversion symmetry (symmetry code: −x + 1, −y + 1, −z + 1). Click here for additional data file. c . DOI: 10.1107/S2056989015015790/su5192fig2.tif The crystal packing of the title compound viewed along the c axis. The hydrogen bonds are shown as dashed lines (see Table 1 for details), and for clarity only the H atoms involved in hydrogen bonding are shown. CCDC reference: 1420119 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Hg2Cl4(C18H15N3)2]Z = 2
Mr = 1089.64F(000) = 1032
Monoclinic, P21/cDx = 2.029 Mg m3
a = 11.7507 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.9026 (11) ŵ = 8.93 mm1
c = 17.050 (2) ÅT = 100 K
β = 90.194 (8)°Needle, yellow
V = 1783.6 (4) Å30.18 × 0.15 × 0.12 mm
Bruker SMART APEX CCD diffractometer4451 independent reflections
Radiation source: fine-focus sealed tube2451 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.098
/w–scansθmax = 28.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −15→15
Tmin = 0.296, Tmax = 0.414k = −11→11
19428 measured reflectionsl = −22→22
Refinement on F21 restraint
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.124w = 1/[σ2(Fo2) + (0.0446P)2] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max = 0.001
4451 reflectionsΔρmax = 1.78 e Å3
220 parametersΔρmin = −1.13 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Hg10.60187 (3)0.67045 (4)0.53562 (2)0.06131 (16)
Cl10.50851 (17)0.6189 (2)0.40995 (11)0.0574 (5)
Cl20.78086 (16)0.5540 (2)0.56798 (12)0.0631 (5)
N10.4820 (5)0.7921 (7)0.6219 (4)0.0525 (16)
N20.6534 (5)0.9389 (7)0.5409 (3)0.0474 (15)
N31.0303 (6)1.1588 (8)0.3773 (4)0.0633 (19)
H3N1.072 (6)1.223 (8)0.403 (4)0.076*
C10.3949 (7)0.7282 (10)0.6584 (5)0.068 (2)
H10.37720.62630.64710.082*
C20.3290 (7)0.8051 (10)0.7125 (5)0.066 (2)
H20.26720.75620.73750.079*
C30.3529 (7)0.9481 (11)0.7291 (5)0.065 (2)
H30.31061.00110.76770.078*
C40.4402 (7)1.0173 (11)0.6891 (4)0.064 (2)
H40.45691.12030.69830.076*
C50.5036 (6)0.9358 (9)0.6355 (4)0.0473 (18)
C60.5981 (6)1.0109 (10)0.5924 (4)0.057 (2)
H60.61681.11250.60350.069*
C70.7473 (6)0.9994 (10)0.4998 (4)0.0543 (19)
C80.7938 (7)1.1435 (9)0.5152 (5)0.060 (2)
H80.76011.20640.55370.073*
C90.8865 (7)1.1914 (10)0.4749 (4)0.063 (2)
H90.91901.28630.48700.076*
C100.9349 (6)1.1035 (10)0.4159 (4)0.054 (2)
C110.8901 (7)0.9631 (10)0.3999 (4)0.057 (2)
H110.92310.90160.36050.069*
C120.7970 (7)0.9128 (9)0.4417 (4)0.055 (2)
H120.76630.81640.43020.066*
C131.0727 (7)1.1208 (9)0.3032 (4)0.055 (2)
C141.1864 (7)1.1437 (9)0.2874 (5)0.056 (2)
H141.23461.18390.32700.067*
C151.2311 (7)1.1094 (10)0.2154 (5)0.064 (2)
H151.31011.12350.20640.077*
C161.1642 (8)1.0554 (10)0.1565 (5)0.064 (2)
H161.19571.03160.10680.077*
C171.0504 (8)1.0362 (11)0.1704 (5)0.073 (3)
H171.00300.99890.12960.088*
C181.0023 (7)1.0698 (10)0.2428 (4)0.067 (3)
H180.92281.05830.25100.080*
U11U22U33U12U13U23
Hg10.0548 (2)0.0531 (2)0.0761 (3)−0.00007 (16)0.00288 (16)−0.01027 (17)
Cl10.0604 (13)0.0501 (12)0.0617 (11)−0.0058 (10)0.0020 (9)0.0005 (10)
Cl20.0529 (12)0.0545 (13)0.0818 (13)0.0041 (10)−0.0016 (10)−0.0070 (11)
N10.049 (4)0.046 (4)0.062 (4)0.002 (3)0.008 (3)0.000 (3)
N20.053 (4)0.038 (4)0.051 (3)−0.001 (3)−0.005 (3)0.000 (3)
N30.063 (5)0.069 (5)0.058 (4)−0.017 (4)0.012 (3)−0.017 (4)
C10.059 (6)0.047 (5)0.098 (6)−0.002 (4)0.012 (5)−0.002 (5)
C20.059 (6)0.062 (7)0.076 (6)0.002 (4)0.021 (4)−0.003 (5)
C30.064 (6)0.064 (6)0.068 (5)0.010 (5)0.024 (4)−0.006 (5)
C40.064 (6)0.059 (6)0.068 (5)0.000 (4)0.004 (4)−0.016 (5)
C50.043 (4)0.046 (5)0.054 (4)0.004 (3)0.006 (3)−0.007 (4)
C60.064 (5)0.045 (5)0.062 (5)−0.004 (4)0.006 (4)−0.011 (4)
C70.058 (5)0.047 (5)0.057 (4)0.000 (4)0.001 (4)0.008 (4)
C80.070 (6)0.050 (6)0.062 (5)−0.010 (4)0.015 (4)−0.013 (4)
C90.060 (6)0.063 (7)0.067 (5)−0.015 (4)0.012 (4)−0.008 (4)
C100.044 (5)0.065 (6)0.052 (4)−0.006 (4)0.010 (4)−0.008 (4)
C110.059 (5)0.050 (5)0.062 (5)0.001 (4)0.008 (4)−0.012 (4)
C120.064 (5)0.040 (5)0.061 (5)−0.004 (4)0.006 (4)−0.011 (4)
C130.057 (5)0.046 (5)0.060 (5)−0.001 (4)0.001 (4)0.000 (4)
C140.046 (5)0.055 (5)0.066 (5)−0.006 (4)0.001 (4)0.003 (4)
C150.061 (6)0.059 (6)0.073 (6)0.008 (4)0.014 (5)−0.001 (5)
C160.080 (6)0.054 (6)0.058 (5)−0.005 (5)0.011 (4)−0.002 (4)
C170.075 (6)0.074 (7)0.070 (5)−0.017 (5)−0.007 (5)−0.006 (5)
C180.053 (5)0.087 (8)0.062 (5)−0.011 (5)−0.001 (4)−0.009 (5)
Hg1—N12.310 (6)C7—C121.388 (10)
Hg1—Cl22.407 (2)C7—C81.418 (11)
Hg1—Cl12.4474 (19)C8—C91.360 (10)
Hg1—N22.467 (6)C8—H80.9500
N1—C51.325 (9)C9—C101.396 (10)
N1—C11.327 (10)C9—H90.9500
N2—C61.269 (9)C10—C111.383 (11)
N2—C71.414 (9)C11—C121.381 (10)
N3—C101.392 (10)C11—H110.9500
N3—C131.401 (9)C12—H120.9500
N3—H3N0.87 (2)C13—C141.379 (10)
C1—C21.387 (11)C13—C181.394 (10)
C1—H10.9500C14—C151.371 (10)
C2—C31.334 (11)C14—H140.9500
C2—H20.9500C15—C161.360 (11)
C3—C41.380 (11)C15—H150.9500
C3—H30.9500C16—C171.370 (11)
C4—C51.386 (10)C16—H160.9500
C4—H40.9500C17—C181.392 (10)
C5—C61.491 (10)C17—H170.9500
C6—H60.9500C18—H180.9500
N1—Hg1—Cl2126.16 (16)N2—C7—C8123.6 (7)
N1—Hg1—Cl1111.91 (16)C9—C8—C7120.0 (8)
Cl2—Hg1—Cl1120.57 (7)C9—C8—H8120.0
N1—Hg1—N270.9 (2)C7—C8—H8120.0
Cl2—Hg1—N2101.23 (15)C8—C9—C10121.2 (8)
Cl1—Hg1—N2108.84 (13)C8—C9—H9119.4
C5—N1—C1118.7 (7)C10—C9—H9119.4
C5—N1—Hg1116.5 (5)C11—C10—N3122.2 (7)
C1—N1—Hg1124.8 (6)C11—C10—C9119.5 (8)
C6—N2—C7123.5 (7)N3—C10—C9118.2 (8)
C6—N2—Hg1112.8 (5)C12—C11—C10119.5 (7)
C7—N2—Hg1122.9 (5)C12—C11—H11120.2
C10—N3—C13129.0 (7)C10—C11—H11120.2
C10—N3—H3N117 (5)C11—C12—C7121.6 (7)
C13—N3—H3N114 (6)C11—C12—H12119.2
N1—C1—C2122.2 (8)C7—C12—H12119.2
N1—C1—H1118.9C14—C13—C18118.4 (7)
C2—C1—H1118.9C14—C13—N3119.2 (7)
C3—C2—C1119.7 (8)C18—C13—N3122.2 (7)
C3—C2—H2120.1C15—C14—C13121.1 (7)
C1—C2—H2120.1C15—C14—H14119.4
C2—C3—C4118.5 (8)C13—C14—H14119.4
C2—C3—H3120.8C16—C15—C14121.1 (8)
C4—C3—H3120.8C16—C15—H15119.4
C3—C4—C5119.7 (8)C14—C15—H15119.4
C3—C4—H4120.2C15—C16—C17118.6 (8)
C5—C4—H4120.2C15—C16—H16120.7
N1—C5—C4121.1 (7)C17—C16—H16120.7
N1—C5—C6119.3 (7)C16—C17—C18121.8 (8)
C4—C5—C6119.5 (7)C16—C17—H17119.1
N2—C6—C5119.9 (7)C18—C17—H17119.1
N2—C6—H6120.0C17—C18—C13118.9 (8)
C5—C6—H6120.0C17—C18—H18120.6
C12—C7—N2118.2 (7)C13—C18—H18120.6
C12—C7—C8118.2 (7)
C5—N1—C1—C2−2.7 (12)C7—C8—C9—C102.6 (13)
Hg1—N1—C1—C2176.9 (6)C13—N3—C10—C1125.0 (14)
N1—C1—C2—C3−0.1 (13)C13—N3—C10—C9−157.8 (8)
C1—C2—C3—C42.7 (13)C8—C9—C10—C11−2.2 (13)
C2—C3—C4—C5−2.6 (12)C8—C9—C10—N3−179.5 (8)
C1—N1—C5—C42.7 (11)N3—C10—C11—C12178.2 (7)
Hg1—N1—C5—C4−176.9 (5)C9—C10—C11—C121.1 (12)
C1—N1—C5—C6−177.4 (7)C10—C11—C12—C7−0.4 (12)
Hg1—N1—C5—C62.9 (8)N2—C7—C12—C11−178.9 (7)
C3—C4—C5—N1−0.1 (11)C8—C7—C12—C110.7 (11)
C3—C4—C5—C6−180.0 (7)C10—N3—C13—C14−156.2 (9)
C7—N2—C6—C5−177.1 (6)C10—N3—C13—C1828.2 (14)
Hg1—N2—C6—C5−6.9 (8)C18—C13—C14—C15−3.6 (12)
N1—C5—C6—N23.1 (11)N3—C13—C14—C15−179.4 (8)
C4—C5—C6—N2−177.1 (7)C13—C14—C15—C161.8 (13)
C6—N2—C7—C12−176.5 (7)C14—C15—C16—C170.2 (13)
Hg1—N2—C7—C1214.2 (9)C15—C16—C17—C18−0.2 (14)
C6—N2—C7—C84.0 (11)C16—C17—C18—C13−1.7 (14)
Hg1—N2—C7—C8−165.3 (6)C14—C13—C18—C173.5 (13)
C12—C7—C8—C9−1.8 (12)N3—C13—C18—C17179.1 (8)
N2—C7—C8—C9177.8 (7)
D—H···AD—HH···AD···AD—H···A
N3—H3N···Cl2i0.87 (2)2.67 (3)3.510 (7)161 (7)
C1—H1···Cl1ii0.952.743.493 (9)136
C6—H6···Cl1iii0.952.823.526 (9)132
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H3NCl2i 0.87(2)2.67(3)3.510(7)161(7)
C1H1Cl1ii 0.952.743.493(9)136
C6H6Cl1iii 0.952.823.526(9)132

Symmetry codes: (i) ; (ii) ; (iii) .

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