| Literature DB >> 26396843 |
Senem Çolak1, Salih Zeki Yıldız1, Nagihan Çaylak Delibaş2, Hasan Pişkin2, Tuncer Hökelek3.
Abstract
In the title compound, C20H20N4O2·H2O, the planes of the phen-oxy and phthalo-nitrile rings are oriented at a dihedral angle of 60.39 (5)°. The 3-(di--methyl-amino)-propyl chain has an extended conformation and is cis with respect to the phthalo-nitrile ring. In the crystal, O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonds link the mol-ecules to form slabs parallel to (100). There are also C-H⋯O and C-H⋯N hydrogen bonds and C-H⋯π inter-actions present within the slabs. The slabs are linked by a pair of inversion-related C-H⋯N hydrogen bonds, involving phthalo-nitrile rings, forming a three-dimensional structure.Entities:
Keywords: amido amine derivatives; crystal structure; hydrogen bonding; phthalonitrile derivatives
Year: 2015 PMID: 26396843 PMCID: PMC4555371 DOI: 10.1107/S2056989015014991
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (, )
Cg2 is the centroid of the phenoxy ring C9C14.
|
|
| H |
|
|
|---|---|---|---|---|
| N3H3O3i | 0.89(2) | 1.99(2) | 2.825(2) | 155(2) |
| O3H31N4ii | 0.97(3) | 1.85(3) | 2.808(2) | 168(3) |
| O3H32O2iii | 0.88(3) | 1.93(3) | 2.803(2) | 176(3) |
| C13H13O3i | 0.93 | 2.58 | 3.477(2) | 162 |
| C14H14O2iv | 0.93 | 2.36 | 3.049(2) | 131 |
| C16H16 | 0.97 | 2.96 | 3.661(2) | 130 |
| C2H2N1vi | 0.93 | 2.49 | 3.324(2) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 2Part of the crystal packing of the title compound. The O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonds are shown as dashed lines (see Table 1 ▸). Only H atoms involved in hydrogen bonding have been included for clarity.
Figure 3A partial view of the crystal packing of the title compound. The N—Hamd⋯Ow, O—Hw⋯Oamd, O—Hw⋯Ndma, C—Hphen⋯Oamd and C—Hphen⋯Ow (amd = amide, dma = dimethylamino, w = water and phen = phenoxy) hydrogen bonds, enclosing (7) and (7) ring motifs, are shown as dashed lines (see Table 1 ▸). Only H atoms involved in hydrogen bonding have been included for clarity.
Figure 4A view along the b axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 ▸). Only H atoms involved in hydrogen bonding (grey balls) have been included for clarity.
Experimental details
| Crystal data | |
| Chemical formula | C20H20N4O2H2O |
|
| 366.42 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 12.9004(4), 10.5012(3), 14.1343(4) |
| () | 99.819(5) |
|
| 1886.72(10) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.09 |
| Crystal size (mm) | 0.41 0.21 0.12 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
| Absorption correction | Multi-scan ( |
|
| 0.964, 0.989 |
| No. of measured, independent and observed [ | 11419, 4167, 3181 |
|
| 0.048 |
| (sin /)max (1) | 0.641 |
| Refinement | |
|
| 0.050, 0.134, 1.03 |
| No. of reflections | 4167 |
| No. of parameters | 258 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.30, 0.27 |
Computer programs: APEX2 (Bruker, 2012 ▸), SAINT (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), Mercury (Macrae et al., 2008 ▸), WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C20H20N4O2·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3102 reflections |
| θ = 2.4–27.6° | |
| µ = 0.09 mm−1 | |
| β = 99.819 (5)° | Block, colourless |
| 0.41 × 0.21 × 0.12 mm | |
| Bruker Kappa APEXII CCD area-detector diffractometer | 4167 independent reflections |
| Radiation source: fine-focus sealed tube | 3181 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 27.1°, θmin = 1.6° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 11419 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4167 reflections | (Δ/σ)max < 0.001 |
| 258 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.67288 (10) | 0.57054 (11) | 0.44706 (9) | 0.0266 (3) | |
| O2 | 0.89189 (10) | 0.80540 (12) | 0.12674 (9) | 0.0268 (3) | |
| O3 | 0.03612 (13) | 0.61391 (15) | 0.10156 (11) | 0.0390 (4) | |
| H31 | 0.069 (2) | 0.647 (3) | 0.050 (2) | 0.067 (8)* | |
| H32 | −0.008 (2) | 0.676 (3) | 0.107 (2) | 0.069 (9)* | |
| N1 | 0.44298 (14) | 0.98877 (15) | 0.59877 (12) | 0.0309 (4) | |
| N2 | 0.41361 (14) | 0.74623 (16) | 0.79739 (12) | 0.0324 (4) | |
| N3 | 0.92472 (12) | 0.97057 (14) | 0.22694 (11) | 0.0218 (3) | |
| H3 | 0.9178 (18) | 1.006 (2) | 0.2828 (17) | 0.041 (6)* | |
| N4 | 0.84238 (12) | 1.30422 (14) | 0.03388 (11) | 0.0256 (4) | |
| C1 | 0.62353 (14) | 0.61497 (16) | 0.51863 (12) | 0.0209 (4) | |
| C2 | 0.57723 (14) | 0.73408 (16) | 0.51653 (12) | 0.0207 (4) | |
| H2 | 0.5815 | 0.7908 | 0.4668 | 0.025* | |
| C3 | 0.52459 (13) | 0.76621 (16) | 0.59012 (12) | 0.0202 (4) | |
| C4 | 0.51636 (13) | 0.68108 (16) | 0.66442 (12) | 0.0204 (4) | |
| C5 | 0.56370 (15) | 0.56311 (17) | 0.66438 (13) | 0.0244 (4) | |
| H5 | 0.5594 | 0.5056 | 0.7136 | 0.029* | |
| C6 | 0.61708 (14) | 0.53065 (17) | 0.59187 (13) | 0.0242 (4) | |
| H6 | 0.6491 | 0.4512 | 0.5922 | 0.029* | |
| C7 | 0.47916 (15) | 0.89059 (17) | 0.59306 (13) | 0.0233 (4) | |
| C8 | 0.45955 (14) | 0.71679 (17) | 0.73886 (13) | 0.0234 (4) | |
| C9 | 0.71794 (13) | 0.65280 (16) | 0.38897 (12) | 0.0207 (4) | |
| C10 | 0.70886 (13) | 0.61852 (16) | 0.29416 (12) | 0.0212 (4) | |
| H10 | 0.6684 | 0.5486 | 0.2704 | 0.025* | |
| C11 | 0.76049 (13) | 0.68930 (16) | 0.23528 (12) | 0.0208 (4) | |
| H11 | 0.7549 | 0.6665 | 0.1710 | 0.025* | |
| C12 | 0.82069 (13) | 0.79391 (16) | 0.26930 (12) | 0.0188 (4) | |
| C13 | 0.82780 (14) | 0.82712 (17) | 0.36507 (12) | 0.0217 (4) | |
| H13 | 0.8671 | 0.8979 | 0.3889 | 0.026* | |
| C14 | 0.77737 (14) | 0.75652 (17) | 0.42502 (12) | 0.0232 (4) | |
| H14 | 0.7832 | 0.7784 | 0.4895 | 0.028* | |
| C15 | 0.88129 (13) | 0.85836 (17) | 0.20237 (12) | 0.0196 (4) | |
| C16 | 0.99496 (14) | 1.02932 (18) | 0.16930 (13) | 0.0253 (4) | |
| H16A | 1.0372 | 0.9633 | 0.1465 | 0.030* | |
| H16B | 1.0424 | 1.0863 | 0.2098 | 0.030* | |
| C17 | 0.93865 (15) | 1.10365 (17) | 0.08368 (13) | 0.0246 (4) | |
| H17A | 0.9893 | 1.1300 | 0.0441 | 0.029* | |
| H17B | 0.8875 | 1.0487 | 0.0452 | 0.029* | |
| C18 | 0.88309 (14) | 1.22012 (17) | 0.11356 (13) | 0.0246 (4) | |
| H18A | 0.8252 | 1.1927 | 0.1444 | 0.030* | |
| H18B | 0.9318 | 1.2676 | 0.1605 | 0.030* | |
| C19 | 0.80249 (17) | 1.42049 (19) | 0.07052 (16) | 0.0351 (5) | |
| H19A | 0.8586 | 1.4633 | 0.1118 | 0.053* | |
| H19B | 0.7477 | 1.3998 | 0.1062 | 0.053* | |
| H19C | 0.7748 | 1.4752 | 0.0178 | 0.053* | |
| C20 | 0.75924 (17) | 1.2439 (2) | −0.03341 (16) | 0.0389 (5) | |
| H20A | 0.7852 | 1.1663 | −0.0567 | 0.058* | |
| H20B | 0.7366 | 1.3003 | −0.0863 | 0.058* | |
| H20C | 0.7009 | 1.2251 | −0.0016 | 0.058* |
| O1 | 0.0395 (8) | 0.0162 (6) | 0.0278 (7) | 0.0019 (5) | 0.0165 (6) | 0.0011 (5) |
| O2 | 0.0318 (7) | 0.0291 (7) | 0.0212 (6) | −0.0018 (6) | 0.0090 (5) | −0.0043 (5) |
| O3 | 0.0504 (10) | 0.0340 (9) | 0.0376 (9) | 0.0149 (7) | 0.0218 (7) | 0.0141 (7) |
| N1 | 0.0405 (10) | 0.0237 (9) | 0.0304 (9) | 0.0052 (7) | 0.0115 (7) | 0.0025 (7) |
| N2 | 0.0398 (10) | 0.0268 (9) | 0.0338 (9) | 0.0026 (7) | 0.0155 (8) | −0.0002 (7) |
| N3 | 0.0260 (8) | 0.0203 (8) | 0.0198 (8) | −0.0014 (6) | 0.0058 (6) | 0.0015 (6) |
| N4 | 0.0267 (8) | 0.0210 (8) | 0.0297 (8) | −0.0017 (6) | 0.0062 (7) | 0.0022 (6) |
| C1 | 0.0231 (9) | 0.0180 (9) | 0.0222 (9) | −0.0005 (7) | 0.0052 (7) | −0.0022 (7) |
| C2 | 0.0246 (9) | 0.0179 (9) | 0.0197 (8) | −0.0005 (7) | 0.0043 (7) | 0.0033 (7) |
| C3 | 0.0206 (8) | 0.0168 (8) | 0.0225 (9) | −0.0002 (7) | 0.0020 (7) | 0.0002 (7) |
| C4 | 0.0209 (8) | 0.0193 (9) | 0.0217 (8) | −0.0024 (7) | 0.0056 (7) | −0.0008 (7) |
| C5 | 0.0313 (10) | 0.0191 (9) | 0.0240 (9) | −0.0010 (8) | 0.0083 (7) | 0.0051 (7) |
| C6 | 0.0295 (10) | 0.0164 (9) | 0.0280 (9) | 0.0031 (7) | 0.0087 (8) | 0.0031 (7) |
| C7 | 0.0281 (9) | 0.0204 (9) | 0.0221 (9) | −0.0020 (7) | 0.0060 (7) | 0.0011 (7) |
| C8 | 0.0291 (10) | 0.0164 (9) | 0.0256 (9) | −0.0009 (7) | 0.0069 (8) | 0.0025 (7) |
| C9 | 0.0230 (9) | 0.0167 (8) | 0.0232 (9) | 0.0048 (7) | 0.0067 (7) | 0.0041 (7) |
| C10 | 0.0202 (9) | 0.0178 (9) | 0.0258 (9) | 0.0007 (7) | 0.0040 (7) | −0.0019 (7) |
| C11 | 0.0222 (9) | 0.0216 (9) | 0.0178 (8) | 0.0022 (7) | 0.0014 (7) | −0.0019 (7) |
| C12 | 0.0191 (8) | 0.0178 (8) | 0.0195 (8) | 0.0056 (7) | 0.0030 (6) | 0.0016 (6) |
| C13 | 0.0260 (9) | 0.0182 (9) | 0.0210 (8) | −0.0005 (7) | 0.0039 (7) | −0.0021 (7) |
| C14 | 0.0298 (10) | 0.0229 (9) | 0.0169 (8) | 0.0007 (7) | 0.0040 (7) | −0.0005 (7) |
| C15 | 0.0190 (8) | 0.0206 (9) | 0.0185 (8) | 0.0040 (7) | 0.0015 (6) | 0.0016 (7) |
| C16 | 0.0213 (9) | 0.0263 (10) | 0.0289 (10) | −0.0025 (7) | 0.0060 (7) | 0.0037 (8) |
| C17 | 0.0261 (9) | 0.0236 (10) | 0.0251 (9) | −0.0018 (7) | 0.0074 (7) | 0.0022 (7) |
| C18 | 0.0240 (9) | 0.0244 (10) | 0.0259 (9) | −0.0022 (7) | 0.0055 (7) | 0.0009 (7) |
| C19 | 0.0359 (11) | 0.0263 (10) | 0.0452 (12) | 0.0042 (9) | 0.0128 (9) | 0.0023 (9) |
| C20 | 0.0384 (12) | 0.0285 (11) | 0.0444 (13) | −0.0020 (9) | −0.0083 (10) | 0.0059 (9) |
| O1—C1 | 1.366 (2) | C11—C10 | 1.370 (2) |
| O1—C9 | 1.386 (2) | C11—H11 | 0.9300 |
| O2—C15 | 1.233 (2) | C12—C11 | 1.383 (2) |
| O3—H31 | 0.96 (3) | C12—C13 | 1.386 (2) |
| O3—H32 | 0.87 (3) | C13—H13 | 0.9300 |
| N1—C7 | 1.140 (2) | C14—C9 | 1.379 (2) |
| N3—C16 | 1.455 (2) | C14—C13 | 1.371 (2) |
| N3—H3 | 0.89 (2) | C14—H14 | 0.9300 |
| N4—C18 | 1.457 (2) | C15—N3 | 1.325 (2) |
| N4—C19 | 1.454 (2) | C15—C12 | 1.489 (2) |
| N4—C20 | 1.452 (2) | C16—C17 | 1.517 (2) |
| C1—C2 | 1.384 (2) | C16—H16A | 0.9700 |
| C1—C6 | 1.376 (2) | C16—H16B | 0.9700 |
| C2—C3 | 1.378 (2) | C17—C18 | 1.514 (3) |
| C2—H2 | 0.9300 | C17—H17A | 0.9700 |
| C4—C3 | 1.397 (2) | C17—H17B | 0.9700 |
| C4—C5 | 1.381 (2) | C18—H18A | 0.9700 |
| C5—C6 | 1.372 (3) | C18—H18B | 0.9700 |
| C5—H5 | 0.9300 | C19—H19A | 0.9600 |
| C6—H6 | 0.9300 | C19—H19B | 0.9600 |
| C7—C3 | 1.435 (2) | C19—H19C | 0.9600 |
| C8—N2 | 1.140 (2) | C20—H20A | 0.9600 |
| C8—C4 | 1.431 (3) | C20—H20B | 0.9600 |
| C10—C9 | 1.373 (2) | C20—H20C | 0.9600 |
| C10—H10 | 0.9300 | ||
| C1—O1—C9 | 121.43 (13) | C12—C13—H13 | 119.7 |
| H31—O3—H32 | 99 (2) | C14—C13—C12 | 120.56 (16) |
| C15—N3—C16 | 120.40 (16) | C14—C13—H13 | 119.7 |
| C15—N3—H3 | 120.2 (15) | C9—C14—H14 | 120.3 |
| C16—N3—H3 | 119.0 (15) | C13—C14—C9 | 119.44 (16) |
| C19—N4—C18 | 109.66 (15) | C13—C14—H14 | 120.3 |
| C20—N4—C18 | 111.73 (15) | O2—C15—N3 | 121.58 (16) |
| C20—N4—C19 | 109.46 (16) | O2—C15—C12 | 119.59 (16) |
| O1—C1—C2 | 123.13 (15) | N3—C15—C12 | 118.82 (15) |
| O1—C1—C6 | 115.67 (15) | N3—C16—C17 | 113.93 (15) |
| C6—C1—C2 | 121.10 (16) | N3—C16—H16A | 108.8 |
| C1—C2—H2 | 120.9 | N3—C16—H16B | 108.8 |
| C3—C2—C1 | 118.13 (16) | C17—C16—H16A | 108.8 |
| C3—C2—H2 | 120.9 | C17—C16—H16B | 108.8 |
| C2—C3—C4 | 121.43 (16) | H16A—C16—H16B | 107.7 |
| C2—C3—C7 | 120.07 (16) | C16—C17—H17A | 109.2 |
| C4—C3—C7 | 118.48 (16) | C16—C17—H17B | 109.2 |
| C5—C4—C3 | 118.90 (16) | C18—C17—C16 | 112.23 (15) |
| C5—C4—C8 | 121.15 (16) | C18—C17—H17A | 109.2 |
| C3—C4—C8 | 119.95 (16) | C18—C17—H17B | 109.2 |
| C4—C5—H5 | 119.9 | H17A—C17—H17B | 107.9 |
| C6—C5—C4 | 120.11 (16) | N4—C18—C17 | 113.55 (15) |
| C6—C5—H5 | 119.9 | N4—C18—H18A | 108.9 |
| C1—C6—H6 | 119.8 | N4—C18—H18B | 108.9 |
| C5—C6—C1 | 120.32 (17) | C17—C18—H18A | 108.9 |
| C5—C6—H6 | 119.8 | C17—C18—H18B | 108.9 |
| N1—C7—C3 | 177.56 (19) | H18A—C18—H18B | 107.7 |
| N2—C8—C4 | 179.2 (2) | N4—C19—H19A | 109.5 |
| C10—C9—O1 | 116.12 (16) | N4—C19—H19B | 109.5 |
| C10—C9—C14 | 121.15 (16) | N4—C19—H19C | 109.5 |
| C14—C9—O1 | 122.44 (15) | H19A—C19—H19B | 109.5 |
| C9—C10—H10 | 120.6 | H19A—C19—H19C | 109.5 |
| C11—C10—C9 | 118.76 (16) | H19B—C19—H19C | 109.5 |
| C11—C10—H10 | 120.6 | N4—C20—H20A | 109.5 |
| C10—C11—C12 | 121.46 (16) | N4—C20—H20B | 109.5 |
| C10—C11—H11 | 119.3 | N4—C20—H20C | 109.5 |
| C12—C11—H11 | 119.3 | H20A—C20—H20B | 109.5 |
| C11—C12—C13 | 118.63 (16) | H20A—C20—H20C | 109.5 |
| C11—C12—C15 | 117.69 (15) | H20B—C20—H20C | 109.5 |
| C13—C12—C15 | 123.50 (16) | ||
| C9—O1—C1—C2 | 26.8 (2) | C4—C5—C6—C1 | −0.2 (3) |
| C9—O1—C1—C6 | −156.73 (16) | C11—C10—C9—O1 | −173.73 (15) |
| C1—O1—C9—C10 | −142.73 (16) | C11—C10—C9—C14 | 0.2 (3) |
| C1—O1—C9—C14 | 43.4 (2) | C12—C11—C10—C9 | −0.2 (3) |
| C15—N3—C16—C17 | 84.1 (2) | C13—C12—C11—C10 | −0.3 (3) |
| C20—N4—C18—C17 | 65.6 (2) | C15—C12—C11—C10 | 174.86 (15) |
| C19—N4—C18—C17 | −172.83 (16) | C11—C12—C13—C14 | 0.9 (3) |
| O1—C1—C2—C3 | 176.48 (16) | C15—C12—C13—C14 | −173.97 (16) |
| C6—C1—C2—C3 | 0.2 (3) | C13—C14—C9—O1 | 173.93 (16) |
| O1—C1—C6—C5 | −176.17 (16) | C13—C14—C9—C10 | 0.4 (3) |
| C2—C1—C6—C5 | 0.4 (3) | C9—C14—C13—C12 | −0.9 (3) |
| C1—C2—C3—C4 | −0.9 (3) | O2—C15—N3—C16 | −5.9 (2) |
| C1—C2—C3—C7 | 177.39 (16) | C12—C15—N3—C16 | 172.51 (14) |
| C5—C4—C3—C2 | 1.1 (3) | O2—C15—C12—C11 | −13.1 (2) |
| C5—C4—C3—C7 | −177.27 (16) | O2—C15—C12—C13 | 161.88 (16) |
| C8—C4—C3—C2 | −178.93 (16) | N3—C15—C12—C11 | 168.50 (15) |
| C8—C4—C3—C7 | 2.7 (2) | N3—C15—C12—C13 | −16.6 (2) |
| C3—C4—C5—C6 | −0.5 (3) | N3—C16—C17—C18 | 66.6 (2) |
| C8—C4—C5—C6 | 179.52 (17) | C16—C17—C18—N4 | 170.87 (15) |
| H··· | ||||
| N3—H3···O3i | 0.89 (2) | 1.99 (2) | 2.825 (2) | 155 (2) |
| O3—H31···N4ii | 0.97 (3) | 1.85 (3) | 2.808 (2) | 168 (3) |
| O3—H32···O2iii | 0.88 (3) | 1.93 (3) | 2.803 (2) | 176 (3) |
| C13—H13···O3i | 0.93 | 2.58 | 3.477 (2) | 162 |
| C14—H14···O2iv | 0.93 | 2.36 | 3.049 (2) | 131 |
| C16—H16 | 0.97 | 2.96 | 3.661 (2) | 130 |
| C2—H2···N1vi | 0.93 | 2.49 | 3.324 (2) | 149 |