Literature DB >> 26396833

Crystal structure of cyclo-sulfamuron.

Gihaeng Kang1, Jineun Kim1, Eunjin Kwon1, Tae Ho Kim1.   

Abstract

The title compound (systematic name: 1-{[2-(cyclo-propylcarbon-yl)anilino]sulfon-yl}-3-(4,6-di-meth-oxy-pyrimidin-2-yl)urea), C17H19N5O6S, is a pyrimidinyl-sulfonyl-urea herbicide. The dihedral angles between the mean planes of the central benzene ring and the cyclo-propyl and pyrimidinyl rings are 75.32 (9) and 88.79 (4)°, respectively. The C atoms of the meth-oxy groups lie almost in the plane of the pyrimidine ring [deviations = 0.043 (2) and 0.028 (2) Å] and intra-molecular N-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds all close S(6) rings. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds and weak π-π inter-actions [centroid-centroid distances = 3.6175 (9) and 3.7068 (9) Å] link adjacent mol-ecules, forming a three-dimensional network.

Entities:  

Keywords:  crystal structure; hydrogen bonding; π–π inter­actions

Year:  2015        PMID: 26396833      PMCID: PMC4571433          DOI: 10.1107/S2056989015014115

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For information on the herbicidal properties of the title compound, see: Sarıgül & İnam (2009 ▸). For a related crystal structure, see: Xia et al. (2008 ▸).

Experimental

Crystal data

C17H19N5O6S M = 421.43 Monoclinic, a = 12.7019 (4) Å b = 9.6216 (3) Å c = 15.6213 (5) Å β = 93.6194 (12)° V = 1905.31 (10) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 173 K 0.32 × 0.27 × 0.23 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▸) T min = 0.934, T max = 0.952 17544 measured reflections 4365 independent reflections 3688 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.113 S = 1.05 4365 reflections 264 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.49 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg, 2010 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015014115/hb7470sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015014115/hb7470Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015014115/hb7470Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015014115/hb7470fig1.tif The asymmetric unit of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Click here for additional data file. c . DOI: 10.1107/S2056989015014115/hb7470fig2.tif Crystal packing viewed along the c axis. The inter­molecular inter­actions are shown as dashed lines. CCDC reference: 1415211 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H19N5O6SF(000) = 880
Mr = 421.43Dx = 1.469 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 12.7019 (4) ÅCell parameters from 6977 reflections
b = 9.6216 (3) Åθ = 2.6–27.4°
c = 15.6213 (5) ŵ = 0.22 mm1
β = 93.6194 (12)°T = 173 K
V = 1905.31 (10) Å3Block, colourless
Z = 40.32 × 0.27 × 0.23 mm
Bruker APEXII CCD diffractometer3688 reflections with I > 2σ(I)
φ and ω scansRint = 0.030
Absorption correction: multi-scan (SADABS; Bruker, 2013)θmax = 27.5°, θmin = 2.0°
Tmin = 0.934, Tmax = 0.952h = −16→15
17544 measured reflectionsk = −12→12
4365 independent reflectionsl = −20→20
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0579P)2 + 0.7248P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4365 reflectionsΔρmax = 0.22 e Å3
264 parametersΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S11.03274 (3)0.41778 (4)0.19915 (2)0.02564 (12)
O11.02757 (11)0.25129 (16)−0.03440 (8)0.0524 (4)
O21.12410 (9)0.48608 (12)0.17159 (7)0.0340 (3)
O30.95254 (9)0.49585 (12)0.23699 (7)0.0343 (3)
O41.19071 (9)0.18921 (12)0.19997 (7)0.0335 (3)
O50.94327 (9)0.31556 (13)0.52112 (7)0.0386 (3)
O61.17908 (10)−0.04334 (14)0.61128 (7)0.0429 (3)
N10.98567 (10)0.33405 (14)0.11638 (8)0.0290 (3)
H1N1.01870.34560.06900.035*
N21.06665 (10)0.30293 (14)0.27345 (8)0.0281 (3)
H2N1.03170.30140.32030.034*
N31.17533 (10)0.13526 (15)0.33969 (8)0.0303 (3)
H3N1.22790.07670.33510.036*
N41.05707 (10)0.22678 (14)0.43352 (8)0.0284 (3)
N51.17993 (10)0.04736 (14)0.47520 (8)0.0302 (3)
C11.00581 (16)0.0853 (2)−0.18258 (11)0.0418 (4)
H1A1.06950.1442−0.17400.050*
H1B1.0162−0.0019−0.21470.050*
C20.90252 (18)0.1560 (2)−0.19567 (11)0.0492 (5)
H2A0.84860.1127−0.23570.059*
H2B0.90190.2589−0.19500.059*
C30.93094 (14)0.08205 (17)−0.11251 (10)0.0354 (4)
H30.8943−0.0082−0.10310.042*
C40.95231 (14)0.17112 (17)−0.03618 (10)0.0334 (4)
C50.88087 (12)0.16383 (17)0.03524 (10)0.0301 (3)
C60.79319 (14)0.0755 (2)0.02989 (12)0.0415 (4)
H60.77970.0215−0.02060.050*
C70.72575 (15)0.0639 (2)0.09523 (13)0.0462 (5)
H70.66720.00230.09010.055*
C80.74454 (14)0.1432 (2)0.16818 (12)0.0432 (4)
H80.69870.13540.21370.052*
C90.82919 (13)0.23370 (19)0.17609 (10)0.0347 (4)
H90.84030.28860.22640.042*
C100.89805 (12)0.24451 (16)0.11062 (9)0.0267 (3)
C111.14737 (12)0.20858 (16)0.26595 (9)0.0267 (3)
C121.13446 (12)0.13831 (16)0.42007 (9)0.0272 (3)
C131.01967 (12)0.22237 (17)0.51212 (9)0.0294 (3)
C141.05796 (13)0.13144 (18)0.57482 (9)0.0325 (4)
H141.03030.12740.62990.039*
C151.13996 (13)0.04587 (18)0.55188 (10)0.0314 (3)
C160.89737 (16)0.3201 (2)0.60284 (11)0.0514 (5)
H16A0.86050.23260.61240.077*
H16B0.84720.39740.60350.077*
H16C0.95310.33360.64840.077*
C171.26553 (16)−0.1300 (2)0.58797 (12)0.0463 (5)
H17A1.2435−0.18510.53720.069*
H17B1.2862−0.19250.63570.069*
H17C1.3256−0.07140.57520.069*
U11U22U33U12U13U23
S10.0234 (2)0.0291 (2)0.02454 (19)−0.00228 (14)0.00254 (14)−0.00382 (13)
O10.0535 (9)0.0729 (10)0.0323 (6)−0.0295 (7)0.0133 (6)−0.0169 (6)
O20.0313 (6)0.0348 (6)0.0362 (6)−0.0109 (5)0.0052 (5)−0.0047 (5)
O30.0321 (6)0.0368 (6)0.0343 (6)0.0076 (5)0.0039 (5)−0.0045 (5)
O40.0305 (6)0.0445 (7)0.0263 (5)0.0045 (5)0.0096 (4)−0.0049 (5)
O50.0368 (7)0.0544 (8)0.0255 (6)0.0162 (6)0.0090 (5)−0.0010 (5)
O60.0459 (8)0.0518 (8)0.0309 (6)0.0133 (6)0.0007 (5)0.0070 (5)
N10.0263 (7)0.0387 (7)0.0222 (6)−0.0083 (6)0.0039 (5)−0.0029 (5)
N20.0243 (7)0.0385 (7)0.0221 (6)0.0048 (5)0.0055 (5)−0.0010 (5)
N30.0256 (7)0.0394 (7)0.0263 (6)0.0096 (6)0.0059 (5)−0.0015 (5)
N40.0253 (7)0.0370 (7)0.0232 (6)0.0037 (5)0.0039 (5)−0.0023 (5)
N50.0263 (7)0.0368 (7)0.0274 (6)0.0026 (6)0.0016 (5)−0.0017 (5)
C10.0512 (11)0.0429 (10)0.0312 (8)0.0058 (8)0.0010 (8)−0.0081 (7)
C20.0760 (15)0.0388 (10)0.0310 (9)0.0193 (10)−0.0112 (9)−0.0048 (7)
C30.0467 (10)0.0305 (8)0.0283 (8)0.0018 (7)−0.0033 (7)−0.0030 (6)
C40.0368 (9)0.0366 (9)0.0262 (7)−0.0024 (7)−0.0031 (6)−0.0015 (6)
C50.0270 (8)0.0333 (8)0.0292 (7)−0.0029 (6)−0.0049 (6)0.0009 (6)
C60.0348 (10)0.0436 (10)0.0451 (10)−0.0099 (8)−0.0048 (8)−0.0083 (8)
C70.0301 (9)0.0511 (11)0.0571 (11)−0.0163 (8)−0.0002 (8)−0.0050 (9)
C80.0282 (9)0.0552 (11)0.0471 (10)−0.0093 (8)0.0086 (7)0.0018 (9)
C90.0255 (8)0.0450 (10)0.0338 (8)−0.0062 (7)0.0027 (6)−0.0025 (7)
C100.0220 (7)0.0304 (8)0.0272 (7)−0.0022 (6)−0.0019 (6)0.0015 (6)
C110.0209 (7)0.0342 (8)0.0252 (7)−0.0015 (6)0.0030 (5)−0.0046 (6)
C120.0234 (7)0.0346 (8)0.0238 (7)−0.0015 (6)0.0017 (6)−0.0037 (6)
C130.0260 (8)0.0379 (8)0.0244 (7)0.0015 (6)0.0033 (6)−0.0057 (6)
C140.0328 (9)0.0429 (9)0.0220 (7)0.0020 (7)0.0036 (6)−0.0029 (6)
C150.0287 (8)0.0383 (9)0.0270 (7)−0.0005 (7)−0.0013 (6)−0.0006 (6)
C160.0513 (12)0.0780 (15)0.0262 (8)0.0277 (11)0.0122 (8)−0.0043 (9)
C170.0476 (11)0.0523 (11)0.0379 (9)0.0167 (9)−0.0058 (8)0.0016 (8)
S1—O21.4237 (11)C2—C31.505 (2)
S1—O31.4238 (11)C2—H2A0.9900
S1—N11.6065 (12)C2—H2B0.9900
S1—N21.6402 (13)C3—C41.480 (2)
O1—C41.227 (2)C3—H31.0000
O4—C111.2132 (17)C4—C51.484 (2)
O5—C131.3351 (19)C5—C61.399 (2)
O5—C161.4372 (19)C5—C101.416 (2)
O6—C151.3366 (19)C6—C71.378 (3)
O6—C171.444 (2)C6—H60.9500
N1—C101.4058 (19)C7—C81.379 (3)
N1—H1N0.8800C7—H70.9500
N2—C111.3799 (19)C8—C91.383 (2)
N2—H2N0.8800C8—H80.9500
N3—C111.378 (2)C9—C101.391 (2)
N3—C121.3890 (18)C9—H90.9500
N3—H3N0.8800C13—C141.379 (2)
N4—C121.327 (2)C14—C151.392 (2)
N4—C131.3449 (19)C14—H140.9500
N5—C151.3303 (19)C16—H16A0.9800
N5—C121.333 (2)C16—H16B0.9800
C1—C21.480 (3)C16—H16C0.9800
C1—C31.495 (2)C17—H17A0.9800
C1—H1A0.9900C17—H17B0.9800
C1—H1B0.9900C17—H17C0.9800
O2—S1—O3120.02 (7)C7—C6—C5122.31 (17)
O2—S1—N1104.90 (7)C7—C6—H6118.8
O3—S1—N1111.04 (7)C5—C6—H6118.8
O2—S1—N2110.02 (7)C6—C7—C8118.96 (17)
O3—S1—N2102.97 (7)C6—C7—H7120.5
N1—S1—N2107.42 (7)C8—C7—H7120.5
C13—O5—C16116.90 (13)C7—C8—C9120.99 (17)
C15—O6—C17116.82 (13)C7—C8—H8119.5
C10—N1—S1127.72 (10)C9—C8—H8119.5
C10—N1—H1N116.1C8—C9—C10120.18 (16)
S1—N1—H1N116.1C8—C9—H9119.9
C11—N2—S1123.13 (10)C10—C9—H9119.9
C11—N2—H2N118.4C9—C10—N1122.06 (14)
S1—N2—H2N118.4C9—C10—C5119.97 (14)
C11—N3—C12130.81 (13)N1—C10—C5117.98 (13)
C11—N3—H3N114.6O4—C11—N3121.65 (14)
C12—N3—H3N114.6O4—C11—N2123.54 (14)
C12—N4—C13115.60 (13)N3—C11—N2114.81 (12)
C15—N5—C12114.47 (13)N4—C12—N5127.86 (14)
C2—C1—C360.76 (12)N4—C12—N3118.65 (14)
C2—C1—H1A117.7N5—C12—N3113.49 (13)
C3—C1—H1A117.7O5—C13—N4112.08 (13)
C2—C1—H1B117.7O5—C13—C14125.27 (14)
C3—C1—H1B117.7N4—C13—C14122.65 (14)
H1A—C1—H1B114.8C13—C14—C15115.36 (14)
C1—C2—C360.10 (12)C13—C14—H14122.3
C1—C2—H2A117.8C15—C14—H14122.3
C3—C2—H2A117.8N5—C15—O6119.06 (15)
C1—C2—H2B117.8N5—C15—C14124.04 (15)
C3—C2—H2B117.8O6—C15—C14116.89 (14)
H2A—C2—H2B114.9O5—C16—H16A109.5
C4—C3—C1119.02 (16)O5—C16—H16B109.5
C4—C3—C2116.34 (14)H16A—C16—H16B109.5
C1—C3—C259.14 (12)O5—C16—H16C109.5
C4—C3—H3116.6H16A—C16—H16C109.5
C1—C3—H3116.6H16B—C16—H16C109.5
C2—C3—H3116.6O6—C17—H17A109.5
O1—C4—C3119.04 (15)O6—C17—H17B109.5
O1—C4—C5121.68 (14)H17A—C17—H17B109.5
C3—C4—C5119.26 (15)O6—C17—H17C109.5
C6—C5—C10117.59 (15)H17A—C17—H17C109.5
C6—C5—C4120.40 (15)H17B—C17—H17C109.5
C10—C5—C4122.01 (14)
O2—S1—N1—C10176.89 (13)C4—C5—C10—C9−179.69 (15)
O3—S1—N1—C10−52.05 (15)C6—C5—C10—N1−179.72 (15)
N2—S1—N1—C1059.84 (15)C4—C5—C10—N10.3 (2)
O2—S1—N2—C11−47.34 (14)C12—N3—C11—O4−177.90 (15)
O3—S1—N2—C11−176.41 (12)C12—N3—C11—N21.5 (2)
N1—S1—N2—C1166.31 (13)S1—N2—C11—O4−10.3 (2)
C2—C1—C3—C4−105.05 (18)S1—N2—C11—N3170.31 (11)
C1—C2—C3—C4109.56 (18)C13—N4—C12—N5−0.8 (2)
C1—C3—C4—O14.1 (2)C13—N4—C12—N3178.68 (14)
C2—C3—C4—O1−63.6 (2)C15—N5—C12—N41.3 (2)
C1—C3—C4—C5−177.36 (15)C15—N5—C12—N3−178.23 (14)
C2—C3—C4—C5114.96 (19)C11—N3—C12—N4−2.0 (2)
O1—C4—C5—C6177.40 (17)C11—N3—C12—N5177.54 (15)
C3—C4—C5—C6−1.1 (2)C16—O5—C13—N4−179.99 (16)
O1—C4—C5—C10−2.6 (3)C16—O5—C13—C14−0.3 (2)
C3—C4—C5—C10178.88 (14)C12—N4—C13—O5179.06 (13)
C10—C5—C6—C7−1.0 (3)C12—N4—C13—C14−0.6 (2)
C4—C5—C6—C7179.00 (18)O5—C13—C14—C15−178.31 (15)
C5—C6—C7—C80.7 (3)N4—C13—C14—C151.3 (2)
C6—C7—C8—C90.4 (3)C12—N5—C15—O6178.96 (14)
C7—C8—C9—C10−1.0 (3)C12—N5—C15—C14−0.4 (2)
C8—C9—C10—N1−179.31 (16)C17—O6—C15—N51.8 (2)
C8—C9—C10—C50.7 (3)C17—O6—C15—C14−178.78 (15)
S1—N1—C10—C910.3 (2)C13—C14—C15—N5−0.8 (2)
S1—N1—C10—C5−169.74 (12)C13—C14—C15—O6179.85 (15)
C6—C5—C10—C90.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10.881.862.5736 (18)137
N2—H2N···N40.881.922.6158 (18)135
C9—H9···O30.952.453.088 (2)124
N3—H3N···O2i0.882.082.9391 (17)165
C2—H2B···O2ii0.992.513.483 (2)169
C3—H3···O4iii1.002.513.286 (2)135
C8—H8···O3iv0.952.503.307 (2)142
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NO10.881.862.5736(18)137
N2H2NN40.881.922.6158(18)135
C9H9O30.952.453.088(2)124
N3H3NO2i 0.882.082.9391(17)165
C2H2BO2ii 0.992.513.483(2)169
C3H3O4iii 1.002.513.286(2)135
C8H8O3iv 0.952.503.307(2)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Crystal structure refinement with SHELXL.

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Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  3 in total

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