Literature DB >> 21201963

Methyl 2-{[3-(4,6-dimethoxy-pyrimidin-2-yl)ureido]sulfonyl-meth-yl}benzoate.

Jin-Yun Xia1, Fang-Shi Li, Li-He Yin, Da-Sheng Yu, Deng-Yu Wu.   

Abstract

In the title compound, C(16)H(18)N(4)O(7)S, a synthetic sulfonyl-urea herbicide, there are intra-molecular N-H⋯N and C-H⋯O hydrogen bonds. Inter-molecular N-H⋯O and C-H⋯O hydrogen bonds form centrosymmetric dimers. The dihedral angle between the two rings is 50.00 (15)°.

Entities:  

Year:  2008        PMID: 21201963      PMCID: PMC2960801          DOI: 10.1107/S1600536808005011

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Kong et al. (1990 ▶); Lee et al. (2002 ▶); Sabadie (1996 ▶).

Experimental

Crystal data

C16H18N4O7S M = 410.41 Monoclinic, a = 33.831 (7) Å b = 6.9020 (14) Å c = 16.021 (3) Å β = 104.48 (3)° V = 3622.1 (13) Å3 Z = 8 Mo Kα radiation μ = 0.23 mm−1 T = 298 (2) K 0.40 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.914, T max = 0.978 3325 measured reflections 3265 independent reflections 2421 reflections with I > 2σ(I) R int = 0.035 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.156 S = 1.03 3265 reflections 253 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005011/cf2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005011/cf2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18N4O7SF000 = 1712
Mr = 410.41Dx = 1.505 Mg m3
Monoclinic, C2/cMelting point = 450–451 K
Hall symbol: -C 2ycMo Kα radiation λ = 0.71073 Å
a = 33.831 (7) ÅCell parameters from 25 reflections
b = 6.9020 (14) Åθ = 10–13º
c = 16.021 (3) ŵ = 0.23 mm1
β = 104.48 (3)ºT = 298 (2) K
V = 3622.1 (13) Å3Needle, colorless
Z = 80.40 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.035
Radiation source: fine-focus sealed tubeθmax = 25.2º
Monochromator: graphiteθmin = 1.2º
T = 298(2) Kh = −40→38
ω/2θ scansk = 0→8
Absorption correction: ψ scan(North et al., 1968)l = 0→19
Tmin = 0.914, Tmax = 0.9783 standard reflections
3325 measured reflections every 200 reflections
3265 independent reflections intensity decay: none
2421 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.156  w = 1/[σ2(Fo2) + (0.08P)2 + 5P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3265 reflectionsΔρmax = 0.26 e Å3
253 parametersΔρmin = −0.31 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.12664 (2)0.14338 (13)0.69392 (5)0.0401 (2)
N10.07804 (7)0.1705 (4)0.64572 (16)0.0424 (7)
H1A0.07190.18360.59060.051*
O10.15578 (7)0.0798 (4)0.92720 (16)0.0557 (7)
C10.19376 (12)−0.2563 (5)0.9629 (3)0.0570 (10)
H1B0.2121−0.36460.97040.085*
H1C0.1676−0.29460.92780.085*
H1D0.1909−0.21391.01820.085*
O20.20987 (7)−0.0991 (3)0.92109 (16)0.0484 (6)
N20.00822 (7)0.1970 (4)0.63164 (16)0.0388 (6)
H2A−0.01140.18570.65650.047*
C20.18727 (9)0.0615 (5)0.90655 (19)0.0379 (7)
N30.02372 (7)0.2300 (4)0.49733 (16)0.0363 (6)
O30.13329 (8)−0.0390 (4)0.73670 (16)0.0576 (7)
C30.20669 (9)0.2172 (5)0.86550 (18)0.0356 (7)
O40.14650 (7)0.1838 (4)0.62677 (15)0.0542 (7)
N4−0.04352 (7)0.2765 (4)0.51521 (16)0.0375 (6)
C40.24906 (9)0.2405 (5)0.8922 (2)0.0432 (8)
H4C0.26470.15130.93000.052*
O50.05149 (7)0.1570 (4)0.76305 (14)0.0509 (6)
C50.26803 (10)0.3949 (5)0.8631 (2)0.0470 (8)
H5A0.29620.41010.88190.056*
O60.03580 (7)0.2645 (4)0.36258 (15)0.0531 (6)
C60.24518 (11)0.5258 (6)0.8063 (2)0.0505 (9)
H6A0.25780.63020.78700.061*
O7−0.09468 (7)0.3699 (4)0.39861 (15)0.0508 (6)
C70.20337 (10)0.5023 (5)0.7779 (2)0.0468 (8)
H7A0.18830.58960.73820.056*
C80.18338 (9)0.3511 (5)0.80731 (19)0.0363 (7)
C90.13757 (9)0.3323 (5)0.7722 (2)0.0406 (8)
H9A0.12640.45370.74600.049*
H9B0.12490.30340.81880.049*
C100.04638 (9)0.1743 (5)0.6850 (2)0.0369 (7)
C11−0.00401 (9)0.2356 (4)0.54321 (19)0.0341 (7)
C120.00998 (10)0.2704 (5)0.4133 (2)0.0388 (7)
C13−0.03018 (10)0.3179 (5)0.3764 (2)0.0438 (8)
H13A−0.03950.34690.31810.053*
C14−0.05548 (9)0.3198 (5)0.4314 (2)0.0391 (7)
C15−0.12294 (10)0.3408 (6)0.4504 (2)0.0573 (10)
H15A−0.14960.38340.41930.086*
H15B−0.11430.41380.50280.086*
H15C−0.12390.20560.46390.086*
C160.07680 (10)0.1963 (6)0.3980 (2)0.0597 (10)
H16A0.09180.20130.35450.090*
H16B0.07600.06520.41750.090*
H16C0.08990.27700.44570.090*
U11U22U33U12U13U23
S0.0287 (4)0.0485 (5)0.0398 (4)0.0025 (3)0.0022 (3)−0.0034 (4)
N10.0293 (13)0.0636 (19)0.0332 (14)−0.0023 (13)0.0057 (11)0.0033 (13)
O10.0422 (14)0.0684 (17)0.0634 (15)0.0099 (12)0.0260 (12)0.0167 (13)
C10.067 (2)0.041 (2)0.065 (2)−0.0069 (18)0.0199 (19)0.0080 (19)
O20.0434 (13)0.0434 (14)0.0610 (15)0.0055 (10)0.0178 (11)0.0100 (11)
N20.0292 (13)0.0450 (16)0.0394 (14)0.0004 (11)0.0035 (11)0.0083 (12)
C20.0350 (17)0.0447 (18)0.0313 (15)0.0025 (14)0.0032 (13)−0.0006 (14)
N30.0344 (14)0.0381 (15)0.0353 (14)−0.0032 (11)0.0069 (11)−0.0003 (11)
O30.0556 (16)0.0440 (15)0.0620 (16)0.0068 (12)−0.0061 (12)0.0009 (12)
C30.0359 (16)0.0420 (18)0.0281 (14)−0.0003 (14)0.0067 (12)−0.0035 (13)
O40.0377 (13)0.0835 (19)0.0434 (13)−0.0003 (12)0.0140 (10)−0.0076 (12)
N40.0319 (13)0.0339 (14)0.0419 (15)−0.0018 (11)0.0001 (11)0.0019 (12)
C40.0339 (16)0.055 (2)0.0373 (17)0.0008 (15)0.0018 (13)−0.0002 (16)
O50.0351 (12)0.0769 (18)0.0383 (13)0.0013 (12)0.0046 (10)0.0061 (12)
C50.0336 (17)0.062 (2)0.0423 (18)−0.0094 (16)0.0041 (14)−0.0014 (17)
O60.0460 (14)0.0707 (17)0.0428 (13)0.0023 (12)0.0117 (11)0.0010 (12)
C60.049 (2)0.057 (2)0.0463 (19)−0.0161 (17)0.0120 (16)0.0005 (17)
O70.0359 (12)0.0585 (15)0.0513 (14)0.0048 (11)−0.0016 (10)0.0134 (12)
C70.0469 (19)0.050 (2)0.0393 (17)0.0003 (16)0.0035 (15)0.0036 (16)
C80.0306 (15)0.0397 (17)0.0360 (16)−0.0009 (13)0.0035 (12)−0.0060 (14)
C90.0344 (16)0.0445 (19)0.0406 (17)0.0049 (14)0.0050 (13)−0.0014 (15)
C100.0304 (15)0.0371 (17)0.0412 (18)−0.0007 (13)0.0052 (13)0.0015 (14)
C110.0312 (15)0.0291 (16)0.0389 (16)−0.0024 (12)0.0028 (13)0.0013 (13)
C120.0439 (18)0.0330 (17)0.0385 (17)−0.0033 (14)0.0083 (14)−0.0030 (14)
C130.0460 (19)0.045 (2)0.0340 (16)−0.0047 (15)−0.0020 (14)0.0006 (14)
C140.0363 (17)0.0323 (17)0.0433 (18)−0.0011 (13)−0.0001 (14)0.0054 (14)
C150.0384 (19)0.068 (3)0.062 (2)0.0021 (18)0.0057 (17)0.011 (2)
C160.0396 (19)0.081 (3)0.057 (2)−0.0040 (19)0.0105 (16)−0.009 (2)
S—O31.424 (3)O5—C101.224 (4)
S—O41.431 (2)C5—C61.374 (5)
S—N11.643 (3)C5—H5A0.930
S—C91.782 (3)O6—C121.334 (4)
N1—C101.372 (4)O6—C161.440 (4)
N1—H1A0.860C6—C71.383 (5)
O1—C21.199 (4)C6—H6A0.930
C1—O21.451 (4)O7—C141.344 (4)
C1—H1B0.960O7—C151.428 (4)
C1—H1C0.960C7—C81.388 (5)
C1—H1D0.960C7—H7A0.930
O2—C21.333 (4)C8—C91.516 (4)
N2—C101.368 (4)C9—H9A0.970
N2—C111.399 (4)C9—H9B0.970
N2—H2A0.860C12—C131.379 (4)
C2—C31.495 (5)C13—C141.373 (5)
N3—C111.329 (4)C13—H13A0.930
N3—C121.339 (4)C15—H15A0.960
C3—C41.399 (4)C15—H15B0.960
C3—C81.406 (4)C15—H15C0.960
N4—C111.330 (4)C16—H16A0.960
N4—C141.336 (4)C16—H16B0.960
C4—C51.384 (5)C16—H16C0.960
C4—H4C0.930
O3—S—O4119.13 (17)C6—C7—H7A119.3
O3—S—N1110.25 (15)C8—C7—H7A119.3
O4—S—N1103.13 (14)C7—C8—C3118.6 (3)
O3—S—C9109.17 (16)C7—C8—C9118.5 (3)
O4—S—C9109.40 (16)C3—C8—C9122.8 (3)
N1—S—C9104.73 (15)C8—C9—S109.7 (2)
C10—N1—S126.2 (2)C8—C9—H9A109.7
C10—N1—H1A116.9S—C9—H9A109.7
S—N1—H1A116.9C8—C9—H9B109.7
O2—C1—H1B109.5S—C9—H9B109.7
O2—C1—H1C109.5H9A—C9—H9B108.2
H1B—C1—H1C109.5O5—C10—N2121.3 (3)
O2—C1—H1D109.5O5—C10—N1122.7 (3)
H1B—C1—H1D109.5N2—C10—N1116.0 (3)
H1C—C1—H1D109.5N3—C11—N4127.5 (3)
C2—O2—C1115.9 (3)N3—C11—N2118.9 (3)
C10—N2—C11130.5 (3)N4—C11—N2113.6 (3)
C10—N2—H2A114.8O6—C12—N3119.4 (3)
C11—N2—H2A114.8O6—C12—C13118.1 (3)
O1—C2—O2123.4 (3)N3—C12—C13122.5 (3)
O1—C2—C3124.3 (3)C14—C13—C12115.6 (3)
O2—C2—C3112.2 (3)C14—C13—H13A122.2
C11—N3—C12115.7 (3)C12—C13—H13A122.2
C4—C3—C8119.3 (3)N4—C14—O7118.1 (3)
C4—C3—C2118.5 (3)N4—C14—C13124.2 (3)
C8—C3—C2121.9 (3)O7—C14—C13117.7 (3)
C11—N4—C14114.4 (3)O7—C15—H15A109.5
C5—C4—C3120.8 (3)O7—C15—H15B109.5
C5—C4—H4C119.6H15A—C15—H15B109.5
C3—C4—H4C119.6O7—C15—H15C109.5
C6—C5—C4119.8 (3)H15A—C15—H15C109.5
C6—C5—H5A120.1H15B—C15—H15C109.5
C4—C5—H5A120.1O6—C16—H16A109.5
C12—O6—C16118.8 (3)O6—C16—H16B109.5
C5—C6—C7120.1 (3)H16A—C16—H16B109.5
C5—C6—H6A120.0O6—C16—H16C109.5
C7—C6—H6A120.0H16A—C16—H16C109.5
C14—O7—C15118.4 (3)H16B—C16—H16C109.5
C6—C7—C8121.4 (3)
O3—S—N1—C1061.5 (3)N1—S—C9—C8−167.4 (2)
O4—S—N1—C10−170.2 (3)C11—N2—C10—O5173.7 (3)
C9—S—N1—C10−55.8 (3)C11—N2—C10—N1−6.9 (5)
C1—O2—C2—O11.1 (5)S—N1—C10—O5−0.1 (5)
C1—O2—C2—C3178.5 (3)S—N1—C10—N2−179.5 (2)
O1—C2—C3—C4139.0 (3)C12—N3—C11—N40.0 (5)
O2—C2—C3—C4−38.4 (4)C12—N3—C11—N2−179.3 (3)
O1—C2—C3—C8−34.9 (5)C14—N4—C11—N3−1.4 (5)
O2—C2—C3—C8147.7 (3)C14—N4—C11—N2178.0 (3)
C8—C3—C4—C51.0 (5)C10—N2—C11—N38.8 (5)
C2—C3—C4—C5−173.1 (3)C10—N2—C11—N4−170.6 (3)
C3—C4—C5—C6−0.9 (5)C16—O6—C12—N36.0 (5)
C4—C5—C6—C7−0.5 (5)C16—O6—C12—C13−173.8 (3)
C5—C6—C7—C81.9 (5)C11—N3—C12—O6−178.8 (3)
C6—C7—C8—C3−1.7 (5)C11—N3—C12—C131.0 (5)
C6—C7—C8—C9−179.0 (3)O6—C12—C13—C14179.3 (3)
C4—C3—C8—C70.3 (4)N3—C12—C13—C14−0.5 (5)
C2—C3—C8—C7174.2 (3)C11—N4—C14—O7−177.5 (3)
C4—C3—C8—C9177.5 (3)C11—N4—C14—C131.9 (5)
C2—C3—C8—C9−8.7 (5)C15—O7—C14—N4−11.2 (4)
C7—C8—C9—S102.8 (3)C15—O7—C14—C13169.4 (3)
C3—C8—C9—S−74.3 (3)C12—C13—C14—N4−1.0 (5)
O3—S—C9—C874.5 (3)C12—C13—C14—O7178.4 (3)
O4—S—C9—C8−57.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N30.861.942.648 (4)138
N2—H2A···O5i0.862.102.951 (3)170
C9—H9B···O10.972.362.970 (4)120
C15—H15C···O1i0.962.433.068 (4)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N30.861.942.648 (4)138
N2—H2A⋯O5i0.862.102.951 (3)170
C9—H9B⋯O10.972.362.970 (4)120
C15—H15C⋯O1i0.962.433.068 (4)124

Symmetry code: (i) .

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