Literature DB >> 26396802

Crystal structure of 2,2,4-trimethyl-2,3,4,5-tetra-hydro-1H-benzo[b][1,4]diazepine hemihydrate.

K S Ezhilarasi1, A Akila2, S Ponnuswamy2, B K Revathi1, G Usha1.   

Abstract

The title compound, C12H18N2·0.5H2O, crystallizes with two independent organic mol-ecules (A and B) in the asymmetric unit, together with a water mol-ecule of crystallization. The diazepine rings in each mol-ecule have a chair conformation. The dihedral angle between benzene ring and the mean plane of the diazepine ring is 21.15 (12)° in mol-ecule A and 17.42 (11)° in mol-ecule B. In the crystal, mol-ecules are linked by N-H⋯O and O-H⋯N hydrogen bonds, forming zigzag chains propagating along [001].

Entities:  

Keywords:  benzodiazepine; crystal structure; hydrogen bonding

Year:  2015        PMID: 26396802      PMCID: PMC4571402          DOI: 10.1107/S2056989015013201

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For examples of biological activities of benzodiazepines, see: De Baun et al. (1976 ▸). For the use of benzodiazepine derivatives as dyes for acrylic fibres, see: Harris & Straley (1968 ▸). For related structures, see: Thiruselvam et al. (2013 ▸); Lamkaddem et al. (2015 ▸); Ponnuswamy et al. (2006 ▸).

Experimental

Crystal data

C12H18N2·0.5H2O M = 199.29 Monoclinic, a = 9.0548 (10) Å b = 23.246 (2) Å c = 11.5613 (14) Å β = 100.483 (3)° V = 2392.9 (4) Å3 Z = 8 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.980, T max = 0.986 22443 measured reflections 4161 independent reflections 2416 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.154 S = 1.03 4161 reflections 293 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014/6 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL2014/6 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015013201/su5164sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013201/su5164Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013201/su5164Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015013201/su5164fig1.tif The mol­ecular structure of the two independent mol­ecules (A and B) of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015013201/su5164fig2.tif The crystal packing of the title compound, viewed along the a axis. The dashed lines indicate the hydrogen bonds (see Table 1 for details; mol­ecule A red, mol­ecule B blue). CCDC reference: 1411680 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H18N2·0.5H2OF(000) = 872
Mr = 199.29Dx = 1.106 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 9.0548 (10) Åθ = 1.8–24.9°
b = 23.246 (2) ŵ = 0.07 mm1
c = 11.5613 (14) ÅT = 293 K
β = 100.483 (3)°Block, colorless
V = 2392.9 (4) Å30.30 × 0.25 × 0.20 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer4161 independent reflections
Radiation source: fine-focus sealed tube2416 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
ω and φ scanθmax = 24.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.980, Tmax = 0.986k = −27→26
22443 measured reflectionsl = −13→13
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.051w = 1/[σ2(Fo2) + (0.0621P)2 + 0.8577P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.154(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.48 e Å3
4161 reflectionsΔρmin = −0.20 e Å3
293 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
4 restraintsExtinction coefficient: 0.0040 (10)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
N10.7167 (2)0.31832 (9)0.7595 (2)0.0571 (6)
H1N0.736 (3)0.3010 (10)0.7008 (18)0.057 (8)*
N20.7489 (2)0.37679 (9)0.97935 (19)0.0501 (5)
H2N0.781 (2)0.3936 (9)1.0446 (16)0.045 (7)*
C130.8453 (2)0.38831 (9)0.8995 (2)0.0428 (6)
C140.8286 (2)0.36004 (10)0.7919 (2)0.0452 (6)
C150.9343 (3)0.36978 (12)0.7212 (2)0.0594 (7)
H150.92140.35250.64750.071*
C161.0578 (3)0.40420 (12)0.7569 (3)0.0630 (7)
H161.12900.40890.70900.076*
C171.0752 (3)0.43161 (12)0.8637 (3)0.0620 (7)
H171.15830.45490.88910.074*
C180.9676 (3)0.42414 (10)0.9325 (2)0.0552 (7)
H180.97740.44381.00350.066*
C190.5856 (3)0.38711 (10)0.9469 (2)0.0545 (7)
C200.5126 (3)0.33939 (11)0.8667 (2)0.0594 (7)
H20A0.53300.30320.90850.071*
H20B0.40480.34530.85360.071*
C210.5583 (3)0.33282 (12)0.7482 (2)0.0614 (7)
H210.53910.36910.70470.074*
C220.4666 (4)0.28509 (16)0.6785 (3)0.0966 (11)
H22A0.49460.28170.60260.145*
H22B0.36170.29420.66890.145*
H22C0.48580.24930.72010.145*
C230.5232 (4)0.38475 (14)1.0604 (3)0.0832 (9)
H23A0.56730.41491.11220.125*
H23B0.54670.34821.09780.125*
H23C0.41620.38971.04290.125*
C240.5541 (4)0.44577 (13)0.8872 (3)0.0859 (10)
H24A0.59980.47550.93940.129*
H24B0.44770.45200.86840.129*
H24C0.59520.44660.81630.129*
N30.9623 (2)0.08032 (10)0.75961 (19)0.0552 (6)
H3N0.959 (3)0.0442 (8)0.738 (2)0.060 (8)*
N40.9115 (2)0.19484 (10)0.8412 (2)0.0564 (6)
H4N0.878 (3)0.2259 (9)0.867 (2)0.071 (9)*
C10.8201 (3)0.14813 (10)0.8611 (2)0.0485 (6)
C20.6969 (3)0.15719 (13)0.9136 (2)0.0608 (7)
H20.67890.19400.93920.073*
C30.6004 (3)0.11377 (14)0.9293 (3)0.0703 (8)
H30.51720.12140.96360.084*
C40.6268 (3)0.05903 (14)0.8944 (3)0.0698 (8)
H40.56260.02910.90560.084*
C50.7493 (3)0.04893 (11)0.8427 (2)0.0600 (7)
H50.76740.01170.81950.072*
C60.8469 (3)0.09240 (11)0.8238 (2)0.0480 (6)
C71.1215 (3)0.09048 (12)0.8137 (2)0.0566 (7)
C81.1544 (3)0.15471 (13)0.8175 (3)0.0656 (8)
H8A1.26140.15960.84520.079*
H8B1.13240.16900.73740.079*
C91.0732 (3)0.19262 (11)0.8915 (3)0.0605 (7)
H91.08630.17670.97130.073*
C101.2146 (3)0.06159 (16)0.7333 (3)0.0893 (11)
H10A1.19370.02110.72960.134*
H10B1.31940.06760.76360.134*
H10C1.18960.07780.65580.134*
C111.1571 (3)0.06352 (13)0.9354 (3)0.0776 (9)
H11A1.14520.02250.92880.116*
H11B1.08990.07860.98330.116*
H11C1.25880.07240.97100.116*
C121.1335 (3)0.25374 (14)0.8980 (3)0.0984 (12)
H12A1.07940.27680.94520.148*
H12B1.12090.26960.82010.148*
H12C1.23820.25350.93270.148*
O10.8427 (3)0.26647 (10)1.0918 (3)0.0817 (7)
H1W0.861 (4)0.2794 (15)1.161 (3)0.098 (14)*
H2W0.809 (4)0.2957 (17)1.050 (3)0.114 (15)*
U11U22U33U12U13U23
N10.0624 (15)0.0558 (13)0.0550 (15)−0.0084 (11)0.0155 (12)−0.0159 (11)
N20.0565 (13)0.0543 (13)0.0407 (13)−0.0018 (10)0.0117 (11)−0.0061 (11)
C130.0454 (14)0.0404 (13)0.0432 (15)0.0044 (11)0.0098 (11)0.0019 (11)
C140.0455 (14)0.0449 (14)0.0450 (15)0.0016 (11)0.0078 (11)0.0002 (11)
C150.0599 (17)0.0710 (18)0.0489 (16)−0.0039 (14)0.0142 (13)−0.0050 (13)
C160.0556 (17)0.0743 (18)0.0628 (19)−0.0033 (14)0.0206 (14)0.0047 (16)
C170.0502 (16)0.0662 (18)0.068 (2)−0.0099 (13)0.0071 (14)0.0016 (15)
C180.0579 (16)0.0551 (16)0.0511 (17)−0.0044 (13)0.0058 (13)−0.0073 (12)
C190.0508 (15)0.0552 (16)0.0618 (18)0.0055 (12)0.0216 (13)0.0000 (13)
C200.0494 (15)0.0621 (17)0.0684 (19)−0.0023 (12)0.0150 (13)0.0008 (14)
C210.0542 (16)0.0690 (18)0.0604 (19)−0.0100 (13)0.0086 (13)−0.0041 (14)
C220.080 (2)0.120 (3)0.088 (3)−0.040 (2)0.0105 (18)−0.031 (2)
C230.082 (2)0.097 (2)0.080 (2)−0.0006 (18)0.0405 (18)−0.0111 (18)
C240.079 (2)0.069 (2)0.113 (3)0.0140 (16)0.0257 (19)0.0008 (18)
N30.0463 (13)0.0679 (16)0.0517 (14)0.0055 (11)0.0100 (10)−0.0027 (12)
N40.0496 (13)0.0521 (14)0.0662 (16)0.0015 (11)0.0073 (11)0.0007 (11)
C10.0411 (14)0.0554 (16)0.0462 (15)0.0010 (12)0.0006 (11)0.0032 (12)
C20.0429 (15)0.0755 (19)0.0633 (18)0.0046 (14)0.0081 (13)−0.0101 (14)
C30.0455 (16)0.095 (2)0.073 (2)0.0023 (16)0.0178 (14)−0.0012 (17)
C40.0516 (17)0.080 (2)0.079 (2)−0.0084 (15)0.0143 (15)0.0148 (17)
C50.0556 (16)0.0565 (16)0.0675 (19)0.0021 (13)0.0100 (14)0.0074 (13)
C60.0399 (14)0.0614 (16)0.0418 (15)0.0022 (12)0.0052 (11)0.0058 (12)
C70.0438 (15)0.0738 (19)0.0522 (17)0.0099 (13)0.0087 (12)0.0064 (14)
C80.0404 (14)0.090 (2)0.0657 (19)−0.0016 (14)0.0076 (13)0.0205 (16)
C90.0480 (15)0.0640 (18)0.0665 (19)−0.0068 (13)0.0027 (13)0.0078 (14)
C100.0529 (18)0.131 (3)0.086 (2)0.0169 (18)0.0190 (16)−0.014 (2)
C110.0698 (19)0.084 (2)0.075 (2)0.0150 (15)0.0010 (16)0.0181 (17)
C120.069 (2)0.074 (2)0.145 (3)−0.0189 (17)0.001 (2)0.008 (2)
O10.120 (2)0.0592 (14)0.0643 (16)−0.0014 (13)0.0126 (14)0.0038 (13)
N1—C141.404 (3)N3—C71.482 (3)
N1—C211.455 (3)N3—H3N0.874 (16)
N1—H1N0.835 (16)N4—C11.410 (3)
N2—C131.406 (3)N4—C91.475 (3)
N2—C191.477 (3)N4—H4N0.856 (17)
N2—H2N0.852 (16)C1—C21.380 (3)
C13—C181.382 (3)C1—C61.400 (3)
C13—C141.391 (3)C2—C31.368 (4)
C14—C151.386 (3)C2—H20.9300
C15—C161.376 (4)C3—C41.369 (4)
C15—H150.9300C3—H30.9300
C16—C171.372 (4)C4—C51.373 (4)
C16—H160.9300C4—H40.9300
C17—C181.377 (4)C5—C61.386 (3)
C17—H170.9300C5—H50.9300
C18—H180.9300C7—C101.520 (4)
C19—C201.518 (4)C7—C111.520 (4)
C19—C231.521 (4)C7—C81.522 (4)
C19—C241.532 (4)C8—C91.510 (4)
C20—C211.510 (4)C8—H8A0.9700
C20—H20A0.9700C8—H8B0.9700
C20—H20B0.9700C9—C121.519 (4)
C21—C221.525 (4)C9—H90.9800
C21—H210.9800C10—H10A0.9600
C22—H22A0.9600C10—H10B0.9600
C22—H22B0.9600C10—H10C0.9600
C22—H22C0.9600C11—H11A0.9600
C23—H23A0.9600C11—H11B0.9600
C23—H23B0.9600C11—H11C0.9600
C23—H23C0.9600C12—H12A0.9600
C24—H24A0.9600C12—H12B0.9600
C24—H24B0.9600C12—H12C0.9600
C24—H24C0.9600O1—H1W0.84 (4)
N3—C61.415 (3)O1—H2W0.86 (4)
C14—N1—C21121.0 (2)C6—N3—H3N110.3 (17)
C14—N1—H1N107.4 (18)C7—N3—H3N104.9 (17)
C21—N1—H1N113.0 (18)C1—N4—C9118.6 (2)
C13—N2—C19121.0 (2)C1—N4—H4N109.9 (18)
C13—N2—H2N109.9 (16)C9—N4—H4N106.1 (19)
C19—N2—H2N108.4 (15)C2—C1—C6118.4 (2)
C18—C13—C14118.9 (2)C2—C1—N4120.0 (2)
C18—C13—N2119.7 (2)C6—C1—N4121.5 (2)
C14—C13—N2121.2 (2)C3—C2—C1122.2 (3)
C15—C14—C13118.4 (2)C3—C2—H2118.9
C15—C14—N1119.9 (2)C1—C2—H2118.9
C13—C14—N1121.4 (2)C2—C3—C4119.8 (3)
C16—C15—C14121.9 (3)C2—C3—H3120.1
C16—C15—H15119.0C4—C3—H3120.1
C14—C15—H15119.0C3—C4—C5119.0 (3)
C17—C16—C15119.6 (3)C3—C4—H4120.5
C17—C16—H16120.2C5—C4—H4120.5
C15—C16—H16120.2C4—C5—C6122.2 (3)
C16—C17—C18118.9 (3)C4—C5—H5118.9
C16—C17—H17120.5C6—C5—H5118.9
C18—C17—H17120.5C5—C6—C1118.3 (2)
C17—C18—C13122.1 (2)C5—C6—N3119.4 (2)
C17—C18—H18118.9C1—C6—N3122.1 (2)
C13—C18—H18118.9N3—C7—C10106.1 (2)
N2—C19—C20109.9 (2)N3—C7—C11110.6 (2)
N2—C19—C23106.7 (2)C10—C7—C11109.6 (2)
C20—C19—C23108.2 (2)N3—C7—C8109.8 (2)
N2—C19—C24110.8 (2)C10—C7—C8108.9 (2)
C20—C19—C24110.5 (2)C11—C7—C8111.7 (2)
C23—C19—C24110.7 (2)C9—C8—C7118.4 (2)
C21—C20—C19117.9 (2)C9—C8—H8A107.7
C21—C20—H20A107.8C7—C8—H8A107.7
C19—C20—H20A107.8C9—C8—H8B107.7
C21—C20—H20B107.8C7—C8—H8B107.7
C19—C20—H20B107.8H8A—C8—H8B107.1
H20A—C20—H20B107.2N4—C9—C8110.3 (2)
N1—C21—C20111.7 (2)N4—C9—C12108.0 (2)
N1—C21—C22108.2 (2)C8—C9—C12111.5 (2)
C20—C21—C22109.9 (2)N4—C9—H9109.0
N1—C21—H21109.0C8—C9—H9109.0
C20—C21—H21109.0C12—C9—H9109.0
C22—C21—H21109.0C7—C10—H10A109.5
C21—C22—H22A109.5C7—C10—H10B109.5
C21—C22—H22B109.5H10A—C10—H10B109.5
H22A—C22—H22B109.5C7—C10—H10C109.5
C21—C22—H22C109.5H10A—C10—H10C109.5
H22A—C22—H22C109.5H10B—C10—H10C109.5
H22B—C22—H22C109.5C7—C11—H11A109.5
C19—C23—H23A109.5C7—C11—H11B109.5
C19—C23—H23B109.5H11A—C11—H11B109.5
H23A—C23—H23B109.5C7—C11—H11C109.5
C19—C23—H23C109.5H11A—C11—H11C109.5
H23A—C23—H23C109.5H11B—C11—H11C109.5
H23B—C23—H23C109.5C9—C12—H12A109.5
C19—C24—H24A109.5C9—C12—H12B109.5
C19—C24—H24B109.5H12A—C12—H12B109.5
H24A—C24—H24B109.5C9—C12—H12C109.5
C19—C24—H24C109.5H12A—C12—H12C109.5
H24A—C24—H24C109.5H12B—C12—H12C109.5
H24B—C24—H24C109.5H1W—O1—H2W104 (3)
C6—N3—C7120.1 (2)
C19—N2—C13—C18125.4 (2)C9—N4—C1—C2123.2 (3)
C19—N2—C13—C14−60.9 (3)C9—N4—C1—C6−59.8 (3)
C18—C13—C14—C15−1.1 (3)C6—C1—C2—C3−0.5 (4)
N2—C13—C14—C15−174.8 (2)N4—C1—C2—C3176.6 (2)
C18—C13—C14—N1172.8 (2)C1—C2—C3—C41.3 (4)
N2—C13—C14—N1−1.0 (3)C2—C3—C4—C5−0.8 (4)
C21—N1—C14—C15−125.1 (3)C3—C4—C5—C6−0.4 (4)
C21—N1—C14—C1361.1 (3)C4—C5—C6—C11.2 (4)
C13—C14—C15—C163.1 (4)C4—C5—C6—N3−173.7 (2)
N1—C14—C15—C16−170.8 (2)C2—C1—C6—C5−0.7 (3)
C14—C15—C16—C17−2.4 (4)N4—C1—C6—C5−177.8 (2)
C15—C16—C17—C18−0.3 (4)C2—C1—C6—N3174.1 (2)
C16—C17—C18—C132.3 (4)N4—C1—C6—N3−3.0 (4)
C14—C13—C18—C17−1.6 (4)C7—N3—C6—C5−122.3 (3)
N2—C13—C18—C17172.2 (2)C7—N3—C6—C163.0 (3)
C13—N2—C19—C2076.8 (3)C6—N3—C7—C10168.2 (2)
C13—N2—C19—C23−166.1 (2)C6—N3—C7—C1149.4 (3)
C13—N2—C19—C24−45.6 (3)C6—N3—C7—C8−74.3 (3)
N2—C19—C20—C21−63.4 (3)N3—C7—C8—C963.8 (3)
C23—C19—C20—C21−179.5 (2)C10—C7—C8—C9179.5 (2)
C24—C19—C20—C2159.2 (3)C11—C7—C8—C9−59.3 (3)
C14—N1—C21—C20−75.5 (3)C1—N4—C9—C878.6 (3)
C14—N1—C21—C22163.4 (2)C1—N4—C9—C12−159.3 (3)
C19—C20—C21—N163.1 (3)C7—C8—C9—N4−67.3 (3)
C19—C20—C21—C22−176.8 (2)C7—C8—C9—C12172.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.84 (2)2.33 (2)3.122 (3)159 (2)
O1—H1W···N4ii0.84 (4)2.14 (4)2.976 (4)175 (3)
O1—H2W···N20.86 (4)2.09 (4)2.930 (3)167 (4)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NO1i 0.84(2)2.33(2)3.122(3)159(2)
O1H1WN4ii 0.84(4)2.14(4)2.976(4)175(3)
O1H2WN20.86(4)2.09(4)2.930(3)167(4)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Chloro-1-(2,4,4-trimethyl-2,3,4,5-tetra-hydro-1H-1,5-benzodiazepin-1-yl)ethanone.

Authors:  V Thiruselvam; D Deepa Rajakumari; A Akila; S Ponnuswamy; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-11

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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