Literature DB >> 26396800

Crystal structure of 2-[bis(1H-pyrazol-1-yl)meth-yl]pyridine.

Kyung-Sun Son1, Jong-Eun Park1, Daeyoung Kim1, Sung Kwon Kang1.   

Abstract

The title compound, C12H11N5, was synthesized as a potential tridentate ligand to make catalytic metal complexes. The dihedral angle between the pyrazolyl rings is 67.9 (1)°. The most prominent feature in the crystal packing are C-H⋯N hydrogen-bonding inter-actions that link the mol-ecules into a supra-molecular tape along the b-axis direction.

Entities:  

Keywords:  C—H⋯N inter­actions; crystal structure; pyrazol­yl; pyrid­yl

Year:  2015        PMID: 26396800      PMCID: PMC4571400          DOI: 10.1107/S2056989015013195

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of the title compound, see: Park et al. (2015 ▸); Hoffmann et al. (2010 ▸). For metal complexes of the similar ligands, see: Anderson et al. (2000 ▸); Liu et al. (2011 ▸); Xiao et al. (2012 ▸). For potential applications of similar ligands in catalysis, see: Park et al. (2015 ▸); Zhang et al. (2009 ▸).

Experimental

Crystal data

C12H11N5 M = 225.26 Triclinic, a = 7.5723 (3) Å b = 8.6376 (3) Å c = 9.7354 (5) Å α = 97.539 (2)° β = 106.123 (4)° γ = 105.510 (5)° V = 574.73 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.26 × 0.24 × 0.09 mm

Data collection

Bruker SMART CCD area-detector diffractometer 18045 measured reflections 2870 independent reflections 1813 reflections with I > 2σ(I) R int = 0.089

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.123 S = 0.98 2870 reflections 153 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.26 e Å−3

Data collection: SMART (Bruker, 2002 ▸); cell refinement: SAINT (Bruker, 2002 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: publCIF (Westrip,2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015013195/tk5373sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015013195/tk5373Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015013195/tk5373Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015013195/tk5373fig1.tif Mol­ecular structure of the title compound, showing the atom-numbering scheme and 30% probability displacement ellipsoids. Click here for additional data file. b . DOI: 10.1107/S2056989015013195/tk5373fig2.tif Part of the crystal structure of the title compound, showing supra­molecular tapes aligned along the b axis and sustained by C—H⋯N hydrogen bonds (dashed lines). CCDC reference: 1411603 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H11N5Z = 2
Mr = 225.26F(000) = 236
Triclinic, P1Dx = 1.302 Mg m3
a = 7.5723 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.6376 (3) ÅCell parameters from 2704 reflections
c = 9.7354 (5) Åθ = 2.2–22.9°
α = 97.539 (2)°µ = 0.09 mm1
β = 106.123 (4)°T = 173 K
γ = 105.510 (5)°Plate, colourless
V = 574.73 (5) Å30.26 × 0.24 × 0.09 mm
Bruker SMART CCD area-detector diffractometerRint = 0.089
Radiation source: fine-focus sealed tubeθmax = 28.4°, θmin = 2.2°
φ and ω scansh = −10→10
18045 measured reflectionsk = −11→11
2870 independent reflectionsl = −12→13
1813 reflections with I > 2σ(I)
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0585P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
2870 reflectionsΔρmax = 0.32 e Å3
153 parametersΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.2525 (2)0.40769 (18)0.78430 (15)0.0249 (3)
H10.33860.37780.86440.030*
N20.05923 (18)0.35498 (16)0.79587 (13)0.0289 (3)
N3−0.09589 (19)0.34989 (18)0.68237 (15)0.0373 (4)
C4−0.2452 (3)0.3038 (2)0.7301 (2)0.0421 (4)
H4−0.37250.29010.67530.051*
C5−0.1886 (3)0.2781 (2)0.8731 (2)0.0488 (4)
H5−0.26730.24520.92920.059*
C60.0106 (3)0.3128 (2)0.91191 (18)0.0382 (4)
H60.09400.30781.00040.046*
N70.32364 (18)0.58610 (15)0.80514 (12)0.0268 (3)
N80.50866 (18)0.66766 (16)0.89361 (13)0.0311 (3)
C90.5303 (3)0.8249 (2)0.89025 (18)0.0370 (4)
H90.64380.91110.94180.044*
C100.3645 (3)0.8456 (2)0.80116 (18)0.0420 (5)
H100.34570.94370.78190.050*
C110.2343 (3)0.6900 (2)0.74763 (18)0.0382 (4)
H110.10800.66120.68370.046*
C120.2556 (2)0.31567 (18)0.64180 (15)0.0237 (3)
N130.24020 (19)0.15718 (16)0.64034 (14)0.0323 (3)
C140.2372 (3)0.0666 (2)0.51714 (19)0.0405 (4)
H140.2239−0.04410.51370.049*
C150.2520 (3)0.1246 (2)0.3968 (2)0.0456 (5)
H150.24930.05580.31380.055*
C160.2709 (3)0.2866 (2)0.40071 (18)0.0421 (4)
H160.28290.33050.32020.050*
C170.2721 (2)0.3854 (2)0.52497 (16)0.0326 (4)
H170.28370.49600.52940.039*
U11U22U33U12U13U23
C10.0240 (8)0.0233 (8)0.0262 (7)0.0089 (6)0.0048 (6)0.0061 (6)
N20.0294 (8)0.0300 (7)0.0288 (7)0.0111 (6)0.0106 (6)0.0055 (5)
N30.0264 (8)0.0442 (9)0.0416 (8)0.0144 (7)0.0078 (6)0.0116 (7)
C40.0279 (9)0.0368 (10)0.0615 (12)0.0103 (8)0.0176 (8)0.0040 (8)
C50.0579 (13)0.0362 (10)0.0570.0060 (9)0.0400 (8)−0.0013 (9)
C60.0504 (12)0.0311 (10)0.0332 (9)0.0075 (8)0.0206 (8)0.0036 (7)
N70.0300 (7)0.0242 (7)0.0237 (6)0.0098 (6)0.0043 (5)0.0039 (5)
N80.0312 (8)0.0285 (8)0.0274 (7)0.0044 (6)0.0069 (6)0.0018 (5)
C90.0483 (11)0.0250 (9)0.0334 (8)0.0043 (8)0.0155 (8)0.0023 (7)
C100.0662 (13)0.0265 (9)0.0376 (9)0.0196 (9)0.0186 (9)0.0082 (7)
C110.0457 (11)0.0321 (9)0.0368 (9)0.0210 (8)0.0053 (8)0.0078 (7)
C120.0180 (8)0.0244 (8)0.0268 (7)0.0076 (6)0.0049 (6)0.0029 (6)
N130.0332 (8)0.0259 (7)0.0347 (7)0.0081 (6)0.0103 (6)0.0018 (6)
C140.0416 (11)0.0320 (10)0.0421 (10)0.0088 (8)0.0128 (8)−0.0035 (8)
C150.0471 (12)0.0455 (12)0.0410 (10)0.0153 (9)0.0141 (8)−0.0009 (8)
C160.0478 (11)0.0506 (12)0.0324 (9)0.0205 (9)0.0162 (8)0.0076 (8)
C170.0371 (10)0.0318 (9)0.0321 (8)0.0152 (8)0.0119 (7)0.0076 (7)
C1—N21.4527 (19)C9—C101.384 (2)
C1—N71.4559 (18)C9—H90.9300
C1—C121.515 (2)C10—C111.368 (2)
C1—H10.9800C10—H100.9300
N2—C61.346 (2)C11—H110.9300
N2—N31.3570 (17)C12—N131.3403 (19)
N3—C41.323 (2)C12—C171.375 (2)
C4—C51.404 (3)N13—C141.334 (2)
C4—H40.9300C14—C151.354 (3)
C5—C61.386 (2)C14—H140.9300
C5—H50.9300C15—C161.362 (3)
C6—H60.9300C15—H150.9300
N7—C111.3502 (19)C16—C171.382 (2)
N7—N81.3578 (16)C16—H160.9300
N8—C91.330 (2)C17—H170.9300
N2—C1—N7110.59 (12)N8—C9—H9123.9
N2—C1—C12110.54 (12)C10—C9—H9123.9
N7—C1—C12113.54 (12)C11—C10—C9104.88 (15)
N2—C1—H1107.3C11—C10—H10127.6
N7—C1—H1107.3C9—C10—H10127.6
C12—C1—H1107.3N7—C11—C10107.06 (15)
C6—N2—N3112.85 (14)N7—C11—H11126.5
C6—N2—C1127.42 (13)C10—C11—H11126.5
N3—N2—C1119.70 (12)N13—C12—C17122.77 (14)
C4—N3—N2104.30 (14)N13—C12—C1113.00 (12)
N3—C4—C5112.05 (16)C17—C12—C1124.22 (13)
N3—C4—H4124.0C14—N13—C12116.65 (14)
C5—C4—H4124.0N13—C14—C15124.63 (17)
C6—C5—C4104.55 (16)N13—C14—H14117.7
C6—C5—H5127.7C15—C14—H14117.7
C4—C5—H5127.7C14—C15—C16118.08 (17)
N2—C6—C5106.26 (15)C14—C15—H15121.0
N2—C6—H6126.9C16—C15—H15121.0
C5—C6—H6126.9C15—C16—C17119.63 (16)
C11—N7—N8111.66 (13)C15—C16—H16120.2
C11—N7—C1130.08 (13)C17—C16—H16120.2
N8—N7—C1118.25 (11)C12—C17—C16118.22 (15)
C9—N8—N7104.15 (13)C12—C17—H17120.9
N8—C9—C10112.24 (15)C16—C17—H17120.9
D—H···AD—HH···AD···AD—H···A
C1—H1···N8i0.982.453.3974 (18)162
C10—H10···N13ii0.932.603.496 (2)161
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1N8i 0.982.453.3974(18)162
C10H10N13ii 0.932.603.496(2)161

Symmetry codes: (i) ; (ii) .

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