Literature DB >> 22199508

Bis{2-[bis-(3,5-dimethyl-1H-pyrazol-1-yl-κN)meth-yl]pyridine-κN}copper(II) dinitrate.

Jia-Cheng Liu1, Guo-Zhe Guo, Chao-Hu Xiao, Xue-Yan Song, Meng Li.   

Abstract

In the mononuclear title complex, [Cu(C(16)H(19)N(5))(2)](NO(3))(2), the Cu(II) ion is located on a twofold rotation axis and is six-coordinated by six N atoms from two 2-[bis-(3,5-dimethyl-1H-pyrazol-1-yl)meth-yl]pyridine ligands, forming a distorted octa-hedral geometry. In the crystal, mol-ecules are linked by weak C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 22199508      PMCID: PMC3238617          DOI: 10.1107/S1600536811045636

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes based on rigid ligands containing pyrazole, see: Zhang et al. (2009 ▶); Otten et al. (2009 ▶); Arroyo et al. (2000 ▶); Morin et al. (2011 ▶). For the bioinorganic chemistry of cooper complexes, see: Turski & Thiele (2009 ▶); Finney et al. (2009 ▶); Tardito & Marchiò (2009 ▶).

Experimental

Crystal data

[Cu(C16H19N5)2](NO3)2 M = 750.28 Monoclinic, a = 24.819 (6) Å b = 10.918 (3) Å c = 17.592 (4) Å β = 132.348 (2)° V = 3523.0 (14) Å3 Z = 4 Mo Kα radiation μ = 0.68 mm−1 T = 296 K 0.23 × 0.22 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.859, T max = 0.899 12411 measured reflections 3266 independent reflections 2601 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.104 S = 1.07 3266 reflections 235 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811045636/ff2036sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045636/ff2036Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C16H19N5)2](NO3)2F(000) = 1564
Mr = 750.28Dx = 1.415 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4634 reflections
a = 24.819 (6) Åθ = 2.2–25.8°
b = 10.918 (3) ŵ = 0.68 mm1
c = 17.592 (4) ÅT = 296 K
β = 132.348 (2)°Block, blue
V = 3523.0 (14) Å30.23 × 0.22 × 0.16 mm
Z = 4
Bruker APEXII CCD diffractometer3266 independent reflections
Radiation source: fine-focus sealed tube2601 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −30→29
Tmin = 0.859, Tmax = 0.899k = −13→13
12411 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0412P)2 + 5.0393P] where P = (Fo2 + 2Fc2)/3
3266 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.5000−0.01320 (4)0.75000.03860 (15)
C10.48707 (15)−0.2377 (2)0.8338 (2)0.0508 (7)
H10.5351−0.25020.86460.061*
C20.45590 (17)−0.3194 (3)0.8536 (2)0.0595 (8)
H20.4828−0.38490.89800.071*
C30.38457 (16)−0.3035 (3)0.8069 (2)0.0598 (8)
H30.3621−0.35860.81830.072*
C40.34694 (15)−0.2046 (2)0.7430 (2)0.0492 (6)
H40.2985−0.19200.71020.059*
C50.38190 (13)−0.1246 (2)0.72802 (18)0.0368 (5)
C60.34211 (13)−0.0120 (2)0.66153 (19)0.0389 (5)
H60.2941−0.01090.64030.047*
C70.26736 (15)−0.0142 (3)0.4692 (2)0.0554 (7)
C80.28709 (17)−0.0194 (3)0.4136 (2)0.0611 (8)
H80.2559−0.01960.34230.073*
C90.36269 (16)−0.0244 (2)0.4835 (2)0.0498 (7)
C100.4118 (2)−0.0301 (4)0.4627 (3)0.0755 (10)
H10A0.4604−0.00780.52370.113*
H10B0.39470.02570.40820.113*
H10C0.4119−0.11190.44270.113*
C110.19391 (19)−0.0068 (5)0.4360 (3)0.1009 (15)
H11A0.1859−0.07850.45880.151*
H11B0.1570−0.00180.36230.151*
H11C0.19160.06470.46550.151*
C120.35339 (18)0.1970 (3)0.7337 (2)0.0553 (7)
C130.4112 (2)0.2737 (3)0.7987 (3)0.0666 (9)
H130.41040.34870.82300.080*
C140.47163 (17)0.2200 (2)0.8223 (2)0.0540 (7)
C150.2759 (2)0.2089 (3)0.6840 (4)0.0882 (12)
H15A0.24550.21710.61100.132*
H15B0.27050.28000.71050.132*
H15C0.26170.13730.69850.132*
C160.54737 (19)0.2688 (3)0.8906 (3)0.0773 (10)
H16A0.58110.20210.91720.116*
H16B0.55800.31300.94650.116*
H16C0.55180.32280.85200.116*
N10.45132 (11)−0.14066 (18)0.77218 (15)0.0392 (5)
N20.38955 (12)−0.0231 (2)0.57884 (16)0.0463 (5)
N30.33024 (11)−0.01645 (19)0.56902 (16)0.0416 (5)
N40.37949 (12)0.09956 (18)0.71912 (16)0.0420 (5)
N50.45224 (12)0.11305 (19)0.77316 (17)0.0448 (5)
N60.35109 (14)0.5779 (2)0.41294 (19)0.0512 (6)
O10.35080 (16)0.6715 (3)0.4505 (2)0.1132 (11)
O20.29475 (13)0.5446 (3)0.3289 (2)0.0896 (8)
O30.40686 (15)0.5216 (2)0.4542 (2)0.1047 (10)
U11U22U33U12U13U23
Cu10.0389 (3)0.0372 (2)0.0438 (3)0.0000.0295 (2)0.000
C10.0402 (15)0.0482 (15)0.0480 (16)0.0088 (12)0.0232 (14)0.0131 (12)
C20.0570 (19)0.0490 (16)0.0591 (19)0.0058 (13)0.0337 (16)0.0185 (14)
C30.0576 (19)0.0546 (17)0.0637 (19)−0.0056 (14)0.0394 (17)0.0134 (14)
C40.0440 (15)0.0497 (15)0.0526 (16)−0.0009 (12)0.0320 (14)0.0070 (13)
C50.0368 (13)0.0370 (12)0.0341 (13)0.0017 (10)0.0229 (12)0.0016 (10)
C60.0371 (13)0.0431 (13)0.0409 (13)0.0054 (11)0.0280 (12)0.0068 (11)
C70.0431 (16)0.0669 (18)0.0400 (15)0.0112 (14)0.0215 (14)0.0093 (13)
C80.0593 (19)0.075 (2)0.0334 (14)0.0083 (16)0.0248 (15)0.0067 (14)
C90.0621 (18)0.0511 (15)0.0426 (15)0.0026 (13)0.0378 (15)0.0022 (12)
C100.085 (2)0.103 (3)0.061 (2)0.004 (2)0.059 (2)0.0016 (19)
C110.0434 (19)0.176 (5)0.057 (2)0.017 (2)0.0226 (18)0.004 (2)
C120.078 (2)0.0428 (15)0.078 (2)0.0118 (14)0.0658 (19)0.0078 (14)
C130.108 (3)0.0402 (15)0.096 (3)−0.0011 (17)0.086 (2)−0.0072 (16)
C140.076 (2)0.0427 (15)0.0636 (19)−0.0079 (14)0.0553 (18)−0.0085 (13)
C150.093 (3)0.062 (2)0.147 (4)0.0158 (19)0.096 (3)0.001 (2)
C160.088 (3)0.062 (2)0.090 (3)−0.0267 (18)0.063 (2)−0.0329 (18)
N10.0345 (11)0.0405 (11)0.0383 (12)0.0020 (9)0.0227 (10)0.0039 (9)
N20.0425 (12)0.0615 (14)0.0384 (12)0.0045 (10)0.0286 (11)0.0039 (10)
N30.0368 (11)0.0503 (12)0.0366 (11)0.0080 (9)0.0243 (10)0.0077 (9)
N40.0501 (13)0.0391 (11)0.0494 (13)0.0049 (9)0.0386 (12)0.0045 (9)
N50.0505 (13)0.0415 (12)0.0508 (13)−0.0030 (10)0.0374 (12)−0.0043 (10)
N60.0515 (15)0.0467 (13)0.0554 (15)−0.0091 (11)0.0361 (14)−0.0065 (11)
O10.103 (2)0.098 (2)0.116 (2)−0.0088 (17)0.065 (2)−0.0504 (18)
O20.0583 (15)0.0995 (19)0.0702 (16)−0.0095 (14)0.0268 (14)−0.0291 (14)
O30.0630 (16)0.0806 (18)0.098 (2)0.0121 (14)0.0247 (16)−0.0141 (15)
Cu1—N5i2.030 (2)C9—C101.491 (4)
Cu1—N52.030 (2)C10—H10A0.9600
Cu1—N12.045 (2)C10—H10B0.9600
Cu1—N1i2.045 (2)C10—H10C0.9600
Cu1—N2i2.339 (2)C11—H11A0.9600
Cu1—N22.339 (2)C11—H11B0.9600
C1—N11.337 (3)C11—H11C0.9600
C1—C21.370 (4)C12—N41.358 (3)
C1—H10.9300C12—C131.363 (4)
C2—C31.371 (4)C12—C151.488 (4)
C2—H20.9300C13—C141.388 (4)
C3—C41.374 (4)C13—H130.9300
C3—H30.9300C14—N51.334 (3)
C4—C51.376 (3)C14—C161.490 (4)
C4—H40.9300C15—H15A0.9600
C5—N11.341 (3)C15—H15B0.9600
C5—C61.516 (3)C15—H15C0.9600
C6—N31.446 (3)C16—H16A0.9600
C6—N41.451 (3)C16—H16B0.9600
C6—H60.9800C16—H16C0.9600
C7—N31.352 (3)N2—N31.363 (3)
C7—C81.359 (4)N4—N51.369 (3)
C7—C111.495 (5)N6—O31.211 (3)
C8—C91.388 (4)N6—O21.219 (3)
C8—H80.9300N6—O11.220 (3)
C9—N21.324 (3)
N5i—Cu1—N594.48 (12)C9—C10—H10C109.5
N5i—Cu1—N1179.57 (9)H10A—C10—H10C109.5
N5—Cu1—N185.63 (8)H10B—C10—H10C109.5
N5i—Cu1—N1i85.63 (8)C7—C11—H11A109.5
N5—Cu1—N1i179.57 (9)C7—C11—H11B109.5
N1—Cu1—N1i94.26 (12)H11A—C11—H11B109.5
N5i—Cu1—N2i87.32 (8)C7—C11—H11C109.5
N5—Cu1—N2i96.28 (8)H11A—C11—H11C109.5
N1—Cu1—N2i93.08 (8)H11B—C11—H11C109.5
N1i—Cu1—N2i83.31 (8)N4—C12—C13105.8 (3)
N5i—Cu1—N296.28 (8)N4—C12—C15123.3 (3)
N5—Cu1—N287.32 (8)C13—C12—C15130.8 (3)
N1—Cu1—N283.31 (8)C12—C13—C14107.9 (3)
N1i—Cu1—N293.08 (8)C12—C13—H13126.1
N2i—Cu1—N2174.72 (11)C14—C13—H13126.1
N1—C1—C2122.8 (3)N5—C14—C13109.3 (3)
N1—C1—H1118.6N5—C14—C16123.0 (3)
C2—C1—H1118.6C13—C14—C16127.7 (3)
C1—C2—C3119.2 (3)C12—C15—H15A109.5
C1—C2—H2120.4C12—C15—H15B109.5
C3—C2—H2120.4H15A—C15—H15B109.5
C2—C3—C4118.8 (3)C12—C15—H15C109.5
C2—C3—H3120.6H15A—C15—H15C109.5
C4—C3—H3120.6H15B—C15—H15C109.5
C3—C4—C5119.2 (3)C14—C16—H16A109.5
C3—C4—H4120.4C14—C16—H16B109.5
C5—C4—H4120.4H16A—C16—H16B109.5
N1—C5—C4122.4 (2)C14—C16—H16C109.5
N1—C5—C6117.9 (2)H16A—C16—H16C109.5
C4—C5—C6119.7 (2)H16B—C16—H16C109.5
N3—C6—N4111.33 (19)C1—N1—C5117.7 (2)
N3—C6—C5111.97 (19)C1—N1—Cu1122.61 (17)
N4—C6—C5111.4 (2)C5—N1—Cu1119.60 (15)
N3—C6—H6107.3C9—N2—N3105.1 (2)
N4—C6—H6107.3C9—N2—Cu1141.70 (19)
C5—C6—H6107.3N3—N2—Cu1112.94 (15)
N3—C7—C8105.9 (3)C7—N3—N2111.6 (2)
N3—C7—C11123.1 (3)C7—N3—C6130.0 (2)
C8—C7—C11131.1 (3)N2—N3—C6118.4 (2)
C7—C8—C9107.0 (3)C12—N4—N5111.0 (2)
C7—C8—H8126.5C12—N4—C6128.9 (2)
C9—C8—H8126.5N5—N4—C6119.95 (19)
N2—C9—C8110.4 (2)C14—N5—N4106.0 (2)
N2—C9—C10121.0 (3)C14—N5—Cu1136.0 (2)
C8—C9—C10128.7 (3)N4—N5—Cu1117.58 (15)
C9—C10—H10A109.5O3—N6—O2119.3 (3)
C9—C10—H10B109.5O3—N6—O1121.5 (3)
H10A—C10—H10B109.5O2—N6—O1119.1 (3)
N1—C1—C2—C31.4 (5)N5—Cu1—N2—N3−38.62 (17)
C1—C2—C3—C4−1.0 (5)N1—Cu1—N2—N347.29 (16)
C2—C3—C4—C5−0.2 (4)N1i—Cu1—N2—N3141.22 (17)
C3—C4—C5—N11.3 (4)C8—C7—N3—N20.0 (3)
C3—C4—C5—C6−177.2 (3)C11—C7—N3—N2−179.8 (3)
N1—C5—C6—N367.1 (3)C8—C7—N3—C6179.4 (2)
C4—C5—C6—N3−114.3 (3)C11—C7—N3—C6−0.4 (5)
N1—C5—C6—N4−58.3 (3)C9—N2—N3—C70.2 (3)
C4—C5—C6—N4120.3 (2)Cu1—N2—N3—C7175.91 (18)
N3—C7—C8—C9−0.2 (3)C9—N2—N3—C6−179.3 (2)
C11—C7—C8—C9179.6 (4)Cu1—N2—N3—C6−3.6 (3)
C7—C8—C9—N20.3 (3)N4—C6—N3—C7−114.3 (3)
C7—C8—C9—C10−179.5 (3)C5—C6—N3—C7120.3 (3)
N4—C12—C13—C14−0.1 (3)N4—C6—N3—N265.1 (3)
C15—C12—C13—C14−179.6 (3)C5—C6—N3—N2−60.3 (3)
C12—C13—C14—N50.3 (3)C13—C12—N4—N5−0.1 (3)
C12—C13—C14—C16−179.8 (3)C15—C12—N4—N5179.4 (3)
C2—C1—N1—C5−0.4 (4)C13—C12—N4—C6176.1 (2)
C2—C1—N1—Cu1176.1 (2)C15—C12—N4—C6−4.4 (4)
C4—C5—N1—C1−1.0 (4)N3—C6—N4—C12110.1 (3)
C6—C5—N1—C1177.6 (2)C5—C6—N4—C12−124.1 (3)
C4—C5—N1—Cu1−177.61 (19)N3—C6—N4—N5−74.0 (3)
C6—C5—N1—Cu11.0 (3)C5—C6—N4—N551.8 (3)
N5—Cu1—N1—C1−133.1 (2)C13—C14—N5—N4−0.4 (3)
N1i—Cu1—N1—C146.47 (18)C16—C14—N5—N4179.8 (3)
N2i—Cu1—N1—C1−37.0 (2)C13—C14—N5—Cu1171.5 (2)
N2—Cu1—N1—C1139.1 (2)C16—C14—N5—Cu1−8.3 (5)
N5—Cu1—N1—C543.32 (18)C12—N4—N5—C140.3 (3)
N1i—Cu1—N1—C5−137.1 (2)C6—N4—N5—C14−176.3 (2)
N2i—Cu1—N1—C5139.39 (18)C12—N4—N5—Cu1−173.37 (17)
N2—Cu1—N1—C5−44.48 (18)C6—N4—N5—Cu110.0 (3)
C8—C9—N2—N3−0.4 (3)N5i—Cu1—N5—C14−40.8 (2)
C10—C9—N2—N3179.5 (3)N1—Cu1—N5—C14139.7 (3)
C8—C9—N2—Cu1−173.9 (2)N2i—Cu1—N5—C1447.0 (3)
C10—C9—N2—Cu15.9 (5)N2—Cu1—N5—C14−136.9 (3)
N5i—Cu1—N2—C940.4 (3)N5i—Cu1—N5—N4130.4 (2)
N5—Cu1—N2—C9134.6 (3)N1—Cu1—N5—N4−49.17 (17)
N1—Cu1—N2—C9−139.5 (3)N2i—Cu1—N5—N4−141.80 (17)
N1i—Cu1—N2—C9−45.6 (3)N2—Cu1—N5—N434.32 (17)
N5i—Cu1—N2—N3−132.84 (17)
D—H···AD—HH···AD···AD—H···A
C2—H2···O3ii0.932.393.245 (4)153
C8—H8···O2iii0.932.463.338 (4)158
C15—H15c···O2iv0.962.293.202 (6)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O3i0.932.393.245 (4)153
C8—H8⋯O2ii0.932.463.338 (4)158
C15—H15c⋯O2iii0.962.293.202 (6)159

Symmetry codes: (i) ; (ii) ; (iii) .

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  7 in total
  2 in total

1.  Bis{2-[bis-(3,5-dimethyl-1H-pyrazol-1-yl-κN(2))meth-yl]pyridine-κN}cobalt(II) dinitrate.

Authors:  Chao-Hu Xiao; Xue-Yan Song; Zan Sun; Ping Cao; Ting Pang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

2.  Crystal structure of 2-[bis(1H-pyrazol-1-yl)meth-yl]pyridine.

Authors:  Kyung-Sun Son; Jong-Eun Park; Daeyoung Kim; Sung Kwon Kang
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-15
  2 in total

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