Literature DB >> 26396794

Crystal structure of (Z)-3-[5-chloro-2-(prop-2-yn-yloxy)phen-yl]-3-hy-droxy-1-[4-(tri-fluoro-meth-yl)phen-yl]-prop-2-en-1-one.

Aarti Dalal1, Ramesh C Kamboj1, Dinesh Kumar2, Mahendra Kumar Sharma3, Nagendran Selvarajan3.   

Abstract

The title compound, C19H12ClF3O3, obtained by the photochemical transformation of 2-[5-chloro-2-(prop-2-yn-yloxy)benzo-yl]-3-[4-(tri-fluoro-meth-yl)phen-yl]oxirane adopts a Z conformation with respect to the enolic C=C double bond. The dihedral angle between the benzene rings is 12.25 (16)° and an intra-molecular O-H⋯O hydrogen bond closes an S(6) ring. An intra-molecular C-H⋯O inter-action also leads to an S(6) ring. In the crystal, very weak C-H⋯O inter-actions and short Cl⋯Cl contacts [3.3221 (16) Å] are seen, as well as weak aromatic π-π stacking inter-actions [centroid-centroid separation = 3.879 (2) Å].

Entities:  

Keywords:  crystal structure; hydrogen bonding; hy­droxy enone; photo-isomerisation; tautomerisation

Year:  2015        PMID: 26396794      PMCID: PMC4571394          DOI: 10.1107/S2056989015012748

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to 1,3-diketones, see: Andrae et al. (1997 ▸); Crouse et al. (1989 ▸); Diana et al. (1978 ▸); Nishiyama et al. (2002 ▸); Sheikh et al. (2009 ▸, 2013 ▸); Tchertanov & Mouscadet (2007 ▸).

Experimental

Crystal data

C19H12ClF3O3 M = 380.74 Triclinic, a = 8.2203 (12) Å b = 9.3822 (14) Å c = 12.3140 (18) Å α = 90.150 (2)° β = 109.201 (2)° γ = 106.212 (2)° V = 856.5 (2) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 273 K 0.34 × 0.29 × 0.14 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▸) T min = 0.912, T max = 0.962 8272 measured reflections 3016 independent reflections 2503 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.191 S = 1.10 3003 reflections 235 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.35 e Å−3

Data collection: SMART (Bruker, 2000 ▸); cell refinement: SAINT (Bruker, 2000 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015012748/hb7451sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015012748/hb7451Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015012748/hb7451Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015012748/hb7451fig1.tif Mol­ecular structure of the title compound showing displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015012748/hb7451fig2.tif A view along the a axis of the inter- and intra­molecular hydrogen bonds in the title compound (shown as dashed lines, see Table 1 for details). Hydrogen atoms not involved in hydrogen bonding are omitted for clarity. Click here for additional data file. a . DOI: 10.1107/S2056989015012748/hb7451fig3.tif A view along the a axis showing F⋯F and Cl⋯Cl contact distances (dashed lines). Hydrogen atoms not involved in the inter­actions are excluded for clarity. Click here for additional data file. b . DOI: 10.1107/S2056989015012748/hb7451fig4.tif A partial view along b axis of the π–π inter­actions (dashed lines) in the crystal packing of the title compound. All hydrogen atoms are omitted for clarity. CCDC reference: 1403411 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H12ClF3O3Z = 2
Mr = 380.74F(000) = 388.0
Triclinic, P1Dx = 1.476 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2203 (12) ÅCell parameters from 3035 reflections
b = 9.3822 (14) Åθ = 2.3–25.6°
c = 12.3140 (18) ŵ = 0.27 mm1
α = 90.150 (2)°T = 273 K
β = 109.201 (2)°Block, colorless
γ = 106.212 (2)°0.34 × 0.29 × 0.14 mm
V = 856.5 (2) Å3
Bruker SMART CCD diffractometer3016 independent reflections
Radiation source: fine-focus sealed tube2503 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −9→9
Tmin = 0.912, Tmax = 0.962k = −11→11
8272 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.191H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0963P)2 + 0.390P] where P = (Fo2 + 2Fc2)/3
3003 reflections(Δ/σ)max = 0.001
235 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.10694 (14)1.10578 (13)1.42182 (7)0.0913 (4)
O30.2888 (3)1.16996 (19)0.99885 (16)0.0600 (5)
O20.1279 (3)0.7541 (2)1.1146 (2)0.0766 (7)
H240.12370.68131.07560.115*
C130.2457 (4)0.7250 (3)0.8037 (2)0.0508 (6)
C120.2108 (4)0.7295 (3)0.9149 (2)0.0525 (7)
C40.1949 (3)1.0149 (3)1.1317 (2)0.0474 (6)
C20.1511 (4)1.0020 (3)1.2318 (2)0.0558 (7)
H20.11470.90801.25570.067*
C60.2471 (3)1.1588 (3)1.0975 (2)0.0485 (6)
C100.1852 (3)0.8758 (3)1.0691 (2)0.0493 (6)
C110.2284 (4)0.8668 (3)0.9711 (2)0.0531 (7)
H110.27070.95450.94080.064*
C150.3271 (4)0.8532 (3)0.7619 (3)0.0585 (7)
H150.36430.94490.80540.070*
C180.3000 (4)0.7117 (3)0.5930 (2)0.0575 (7)
C50.2558 (4)1.2823 (3)1.1638 (3)0.0602 (7)
H50.29061.37711.14100.072*
C170.3537 (4)0.8470 (3)0.6579 (3)0.0618 (7)
H170.40770.93390.63130.074*
C10.1610 (4)1.1259 (4)1.2959 (2)0.0620 (8)
F30.4185 (4)0.8295 (3)0.4541 (2)0.1194 (9)
C70.3400 (4)1.3122 (3)0.9602 (3)0.0611 (7)
H7A0.44851.37601.01790.073*
H7B0.24481.35900.94730.073*
C140.1936 (4)0.5899 (3)0.7376 (3)0.0633 (8)
H140.14000.50260.76410.076*
C30.2136 (4)1.2658 (4)1.2624 (3)0.0656 (8)
H30.22041.34911.30670.079*
C80.3725 (5)1.2911 (4)0.8531 (3)0.0750 (9)
C160.2202 (5)0.5826 (3)0.6329 (3)0.0686 (8)
H160.18440.49110.58930.082*
C190.3237 (5)0.7041 (4)0.4781 (3)0.0763 (9)
C90.3999 (8)1.2763 (5)0.7678 (4)0.1171 (17)
H90.42191.26450.69940.140*
F20.1707 (4)0.6729 (5)0.3933 (2)0.1649 (15)
F10.4002 (7)0.6064 (4)0.4652 (3)0.1871 (19)
O10.1593 (3)0.6070 (2)0.9541 (2)0.0759 (7)
U11U22U33U12U13U23
Cl10.0980 (7)0.1272 (9)0.0637 (6)0.0341 (6)0.0464 (5)0.0084 (5)
O30.0908 (14)0.0395 (10)0.0603 (12)0.0176 (9)0.0411 (11)0.0111 (8)
O20.1181 (19)0.0490 (12)0.0843 (15)0.0281 (12)0.0595 (14)0.0234 (10)
C130.0497 (14)0.0436 (14)0.0584 (16)0.0184 (11)0.0138 (12)0.0050 (12)
C120.0546 (15)0.0452 (14)0.0606 (16)0.0198 (12)0.0194 (13)0.0107 (12)
C40.0428 (13)0.0516 (15)0.0478 (14)0.0153 (11)0.0147 (11)0.0084 (11)
C20.0511 (15)0.0652 (17)0.0518 (15)0.0155 (13)0.0199 (12)0.0142 (13)
C60.0479 (14)0.0473 (14)0.0502 (14)0.0137 (11)0.0168 (11)0.0048 (11)
C100.0491 (14)0.0440 (14)0.0553 (15)0.0151 (11)0.0173 (12)0.0134 (11)
C110.0618 (16)0.0408 (14)0.0579 (16)0.0137 (12)0.0235 (13)0.0104 (12)
C150.0625 (17)0.0463 (15)0.0667 (18)0.0101 (13)0.0272 (14)−0.0019 (13)
C180.0556 (16)0.0593 (17)0.0560 (16)0.0204 (13)0.0145 (13)0.0020 (13)
C50.0659 (18)0.0521 (16)0.0641 (17)0.0166 (13)0.0252 (15)0.0005 (13)
C170.0632 (17)0.0519 (16)0.0696 (19)0.0092 (13)0.0284 (15)0.0047 (14)
C10.0552 (16)0.084 (2)0.0492 (15)0.0215 (15)0.0204 (13)0.0054 (14)
F30.152 (2)0.1049 (18)0.1022 (17)−0.0047 (16)0.0797 (17)−0.0060 (14)
C70.0781 (19)0.0425 (14)0.0730 (19)0.0208 (13)0.0367 (16)0.0161 (13)
C140.082 (2)0.0418 (15)0.0623 (18)0.0163 (14)0.0211 (15)0.0068 (13)
C30.0672 (18)0.071 (2)0.0613 (18)0.0240 (15)0.0219 (15)−0.0085 (15)
C80.109 (3)0.0563 (18)0.085 (2)0.0361 (18)0.057 (2)0.0315 (16)
C160.091 (2)0.0459 (16)0.0621 (18)0.0197 (15)0.0182 (16)−0.0030 (13)
C190.094 (3)0.067 (2)0.062 (2)0.0193 (19)0.0233 (19)−0.0047 (16)
C90.196 (5)0.104 (3)0.111 (3)0.073 (3)0.105 (4)0.051 (3)
F20.118 (2)0.248 (4)0.0599 (14)−0.032 (2)0.0136 (14)0.0125 (18)
F10.372 (6)0.176 (3)0.126 (2)0.180 (4)0.148 (3)0.048 (2)
O10.1138 (18)0.0424 (11)0.0871 (15)0.0259 (11)0.0525 (14)0.0177 (10)
Cl1—C11.745 (3)C18—C171.377 (4)
O3—C61.364 (3)C18—C161.382 (4)
O3—C71.416 (3)C18—C191.494 (4)
O2—C101.310 (3)C5—C31.366 (4)
O2—H240.8200C5—H50.9300
C13—C141.384 (4)C17—H170.9300
C13—C151.393 (4)C1—C31.372 (5)
C13—C121.491 (4)F3—C191.312 (4)
C12—O11.265 (3)C7—C81.452 (4)
C12—C111.409 (4)C7—H7A0.9700
C4—C21.390 (4)C7—H7B0.9700
C4—C61.408 (4)C14—C161.381 (4)
C4—C101.484 (4)C14—H140.9300
C2—C11.371 (4)C3—H30.9300
C2—H20.9300C8—C91.161 (5)
C6—C51.388 (4)C16—H160.9300
C10—C111.373 (4)C19—F11.283 (4)
C11—H110.9300C19—F21.299 (4)
C15—C171.372 (4)C9—H90.9300
C15—H150.9300
C6—O3—C7119.4 (2)C6—C5—H5119.7
C10—O2—H24109.5C15—C17—C18119.8 (3)
C14—C13—C15117.9 (3)C15—C17—H17120.1
C14—C13—C12119.7 (3)C18—C17—H17120.1
C15—C13—C12122.4 (2)C2—C1—C3120.8 (3)
O1—C12—C11121.7 (3)C2—C1—Cl1119.7 (3)
O1—C12—C13118.0 (2)C3—C1—Cl1119.5 (2)
C11—C12—C13120.2 (2)O3—C7—C8107.8 (2)
C2—C4—C6117.9 (2)O3—C7—H7A110.1
C2—C4—C10117.5 (2)C8—C7—H7A110.1
C6—C4—C10124.6 (2)O3—C7—H7B110.1
C1—C2—C4120.9 (3)C8—C7—H7B110.1
C1—C2—H2119.6H7A—C7—H7B108.5
C4—C2—H2119.6C16—C14—C13121.0 (3)
O3—C6—C5122.6 (2)C16—C14—H14119.5
O3—C6—C4117.4 (2)C13—C14—H14119.5
C5—C6—C4120.0 (3)C5—C3—C1119.8 (3)
O2—C10—C11120.1 (2)C5—C3—H3120.1
O2—C10—C4114.1 (2)C1—C3—H3120.1
C11—C10—C4125.9 (2)C9—C8—C7179.0 (4)
C10—C11—C12122.4 (2)C14—C16—C18119.9 (3)
C10—C11—H11118.8C14—C16—H16120.1
C12—C11—H11118.8C18—C16—H16120.1
C17—C15—C13121.4 (3)F1—C19—F2106.7 (4)
C17—C15—H15119.3F1—C19—F3105.4 (4)
C13—C15—H15119.3F2—C19—F3103.3 (3)
C17—C18—C16120.0 (3)F1—C19—C18113.8 (3)
C17—C18—C19120.2 (3)F2—C19—C18111.9 (3)
C16—C18—C19119.8 (3)F3—C19—C18114.9 (3)
C3—C5—C6120.6 (3)C8—C9—H9180.0
C3—C5—H5119.7
C14—C13—C12—O110.5 (4)C4—C6—C5—C3−0.2 (4)
C15—C13—C12—O1−170.5 (3)C13—C15—C17—C18−0.4 (5)
C14—C13—C12—C11−167.0 (3)C16—C18—C17—C15−0.2 (4)
C15—C13—C12—C1112.0 (4)C19—C18—C17—C15178.4 (3)
C6—C4—C2—C1−0.9 (4)C4—C2—C1—C30.3 (4)
C10—C4—C2—C1178.5 (2)C4—C2—C1—Cl1−179.5 (2)
C7—O3—C6—C5−1.2 (4)C6—O3—C7—C8−178.7 (3)
C7—O3—C6—C4179.3 (2)C15—C13—C14—C16−0.6 (4)
C2—C4—C6—O3−179.7 (2)C12—C13—C14—C16178.4 (3)
C10—C4—C6—O31.0 (4)C6—C5—C3—C1−0.4 (5)
C2—C4—C6—C50.8 (4)C2—C1—C3—C50.4 (5)
C10—C4—C6—C5−178.5 (3)Cl1—C1—C3—C5−179.9 (2)
C2—C4—C10—O22.7 (4)O3—C7—C8—C9−158 (26)
C6—C4—C10—O2−178.0 (2)C13—C14—C16—C180.1 (5)
C2—C4—C10—C11−177.9 (3)C17—C18—C16—C140.3 (5)
C6—C4—C10—C111.3 (4)C19—C18—C16—C14−178.2 (3)
O2—C10—C11—C121.0 (4)C17—C18—C19—F1130.3 (4)
C4—C10—C11—C12−178.2 (2)C16—C18—C19—F1−51.1 (5)
O1—C12—C11—C10−2.2 (4)C17—C18—C19—F2−108.6 (4)
C13—C12—C11—C10175.2 (2)C16—C18—C19—F269.9 (4)
C14—C13—C15—C170.7 (4)C17—C18—C19—F38.7 (5)
C12—C13—C15—C17−178.3 (3)C16—C18—C19—F3−172.7 (3)
O3—C6—C5—C3−179.7 (3)
D—H···AD—HH···AD···AD—H···A
O2—H24···O10.821.792.529 (3)149
C11—H11···O30.932.092.747 (3)126
C7—H7B···O1i0.972.623.476 (4)147
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H24O10.821.792.529(3)149
C11H11O30.932.092.747(3)126
C7H7BO1i 0.972.623.476(4)147

Symmetry code: (i) .

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