| Literature DB >> 26396758 |
Abstract
In the structure of the title complex, {[Na(H2O)3](C6H2Cl3N2O2)·3H2O} n , the sodium salt of the herbicide picloram, the cation adopts a polymeric chain structure, based on μ2-aqua-bridged NaO5 trigonal-bipyramidal complex units which have, in addition, a singly bonded water mol-ecule. Each of the bridges within the chain, which extends parallel to the a axis, is centrosymmetric, with Na⋯Na separations of 3.4807 (16) and 3.5109 (16) Å. In the crystal, there are three water mol-ecules of solvation and these, as well as the coordinating water mol-ecules and the amino group of the 4-amino-3,5,6-tri-chloro-picolinate anion, are involved in extensive inter-species hydrogen-bonding inter-actions with carboxyl and water O atoms, as well as the pyridine N atom. Among these associations is a centrosymmetric cyclic tetra-water R 4 (4)(8) motif, resulting in an overall three-dimensional structure.Entities:
Keywords: Tordon; coordination polymer; crystal structure; herbicide; hydrogen bonding; picloram; sodium salt; sodium–water cationic chain
Year: 2015 PMID: 26396758 PMCID: PMC4571359 DOI: 10.1107/S2056989015012633
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The atom-numbering scheme for the hydrated title salt, with non-H atoms drawn as 40% probability ellipsoids. Inter-species hydrogen bonds are shown as dashed lines. Symmetry codes: (ix) x + 1, y, z; (x) x − 1, y, z. For other symmetry codes, see Table 1 ▸.
Selected bond lengths ()
| Na1O1 | 2.4185(16) | Na1O2 | 2.3183(17) |
| Na1O3 | 2.3803(16) | Na1O3 | 2.3530(16) |
| Na1O1 | 2.3529(16) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O1 | 0.82 | 1.97 | 2.786(2) | 178 |
| O1 | 0.89 | 1.99 | 2.877(2) | 174 |
| O2 | 0.94 | 1.79 | 2.721(2) | 171 |
| O2 | 0.84 | 1.98 | 2.816(2) | 172 |
| O3 | 0.88 | 1.93 | 2.781(2) | 163 |
| O3 | 0.90 | 2.02 | 2.910(2) | 170 |
| O4 | 0.99 | 1.93 | 2.916(2) | 173 |
| O4 | 0.93 | 1.99 | 2.918(2) | 174 |
| O5 | 0.90 | 1.87 | 2.748(2) | 166 |
| O5 | 0.90 | 2.01 | 2.8481(19) | 155 |
| O6 | 0.93 | 2.10 | 2.972(2) | 156 |
| O6 | 0.93 | 2.19 | 2.996(2) | 144 |
| N4H41O6 | 0.96 | 2.18 | 3.080(2) | 156 |
| N4H42O4 | 0.97 | 2.22 | 3.146(2) | 160 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .
Figure 2The three-dimensional hydrogen-bonded structure, with inter-species hydrogen bonds and intramolecular N—H⋯Cl associations shown as dashed lines. For symmetry codes, see Fig. 1 ▸ and Table 2 ▸.
Experimental details
| Crystal data | |
| Chemical formula | [Na(H2O)3](C6H2Cl3N2O2)3H2O |
|
| 371.53 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 200 |
|
| 6.5625(5), 8.4574(6), 13.8553(10) |
| , , () | 78.747(6), 79.374(6), 88.864(6) |
|
| 741.17(9) |
|
| 2 |
| Radiation type | Mo |
| (mm1) | 0.68 |
| Crystal size (mm) | 0.35 0.35 0.22 |
| Data collection | |
| Diffractometer | Oxford Diffraction Gemini-S CCD detector |
| Absorption correction | Multi-scan ( |
|
| 0.947, 0.980 |
| No. of measured, independent and observed [ | 6040, 2905, 2487 |
|
| 0.025 |
| (sin /)max (1) | 0.617 |
| Refinement | |
|
| 0.031, 0.088, 1.00 |
| No. of reflections | 2905 |
| No. of parameters | 182 |
| H-atom treatment | H-atom parameters constrained |
| max, min (e 3) | 0.30, 0.28 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SIR92 (Altomare et al., 1993 ▸), SHELXL97 (Sheldrick, 2008 ▸) within WinGX (Farrugia, 2012 ▸), PLATON (Spek, 2009 ▸).
| [Na(H2O)3](C6H2Cl3N2O2)·3H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2548 reflections | |
| θ = 3.8–28.8° | |
| µ = 0.68 mm−1 | |
| α = 78.747 (6)° | |
| β = 79.374 (6)° | Block, colourless |
| γ = 88.864 (6)° | 0.35 × 0.35 × 0.22 mm |
| Oxford Diffraction Gemini-S CCD-detector diffractometer | 2905 independent reflections |
| Radiation source: Enhance (Mo) X-ray source | 2487 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.077 pixels mm-1 | θmax = 26.0°, θmin = 3.3° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6040 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2905 reflections | Δρmax = 0.30 e Å−3 |
| 182 parameters | Δρmin = −0.28 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.050 (3) |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| Cl3 | 0.73580 (8) | 0.09272 (5) | 0.52593 (4) | 0.0257 (2) | |
| Cl5 | 0.76678 (8) | 0.74102 (5) | 0.46993 (4) | 0.0240 (2) | |
| Cl6 | 0.67863 (9) | 0.70381 (6) | 0.70472 (4) | 0.0295 (2) | |
| O21 | 0.4767 (2) | 0.04778 (17) | 0.77535 (11) | 0.0287 (5) | |
| O22 | 0.8188 (2) | 0.04407 (17) | 0.77067 (11) | 0.0292 (5) | |
| N1 | 0.6684 (2) | 0.39495 (18) | 0.71307 (12) | 0.0196 (5) | |
| N4 | 0.7849 (3) | 0.42747 (19) | 0.40294 (12) | 0.0213 (5) | |
| C2 | 0.6814 (3) | 0.2631 (2) | 0.67196 (14) | 0.0172 (5) | |
| C3 | 0.7193 (3) | 0.2696 (2) | 0.57064 (14) | 0.0170 (5) | |
| C4 | 0.7473 (3) | 0.4178 (2) | 0.50250 (14) | 0.0168 (6) | |
| C5 | 0.7335 (3) | 0.5539 (2) | 0.54712 (14) | 0.0173 (5) | |
| C6 | 0.6946 (3) | 0.5361 (2) | 0.64975 (15) | 0.0186 (6) | |
| C21 | 0.6561 (3) | 0.1034 (2) | 0.74534 (14) | 0.0204 (6) | |
| Na1 | 0.24455 (12) | 0.42819 (9) | 1.01558 (6) | 0.0268 (3) | |
| O1W | 0.0817 (2) | 0.53070 (17) | 0.87914 (10) | 0.0299 (5) | |
| O2W | 0.1503 (2) | 0.15728 (17) | 1.05390 (11) | 0.0300 (5) | |
| O3W | 0.4202 (2) | 0.62279 (17) | 1.07140 (10) | 0.0272 (5) | |
| O4W | 0.1371 (2) | 0.27585 (17) | 0.77676 (12) | 0.0317 (5) | |
| O5W | 0.2700 (2) | −0.10534 (18) | 0.95986 (11) | 0.0325 (5) | |
| O6W | 0.1709 (2) | 0.82429 (17) | 0.73270 (11) | 0.0298 (5) | |
| H41 | 0.80460 | 0.32820 | 0.37840 | 0.0260* | |
| H42 | 0.80680 | 0.53330 | 0.36040 | 0.0260* | |
| H11W | 0.09740 | 0.45450 | 0.85000 | 0.0450* | |
| H12W | 0.10510 | 0.62480 | 0.83710 | 0.0450* | |
| H21W | 0.15180 | 0.09520 | 1.11820 | 0.0450* | |
| H22W | 0.19310 | 0.08550 | 1.02150 | 0.0450* | |
| H31W | 0.38250 | 0.71930 | 1.04480 | 0.0410* | |
| H32W | 0.40980 | 0.61800 | 1.13770 | 0.0410* | |
| H41W | 0.02360 | 0.20490 | 0.77150 | 0.0480* | |
| H42W | 0.25100 | 0.20920 | 0.77350 | 0.0480* | |
| H51W | 0.34890 | −0.07030 | 0.89970 | 0.0490* | |
| H52W | 0.15590 | −0.13130 | 0.93860 | 0.18 (2)* | |
| H61W | 0.06160 | 0.89510 | 0.72480 | 0.0450* | |
| H62W | 0.30130 | 0.87260 | 0.72460 | 0.0450* |
| Cl3 | 0.0359 (3) | 0.0159 (2) | 0.0269 (3) | 0.0007 (2) | −0.0044 (2) | −0.0091 (2) |
| Cl5 | 0.0280 (3) | 0.0146 (2) | 0.0282 (3) | −0.0001 (2) | −0.0049 (2) | −0.0012 (2) |
| Cl6 | 0.0412 (3) | 0.0196 (3) | 0.0309 (3) | 0.0023 (2) | −0.0063 (2) | −0.0131 (2) |
| O21 | 0.0247 (8) | 0.0260 (8) | 0.0314 (9) | −0.0065 (6) | −0.0013 (6) | 0.0013 (6) |
| O22 | 0.0290 (8) | 0.0250 (8) | 0.0318 (9) | 0.0043 (6) | −0.0089 (7) | 0.0013 (6) |
| N1 | 0.0202 (9) | 0.0195 (8) | 0.0195 (9) | 0.0004 (6) | −0.0025 (7) | −0.0060 (7) |
| N4 | 0.0263 (9) | 0.0197 (8) | 0.0178 (8) | 0.0009 (7) | −0.0031 (7) | −0.0042 (6) |
| C2 | 0.0128 (9) | 0.0164 (9) | 0.0220 (10) | 0.0008 (7) | −0.0024 (7) | −0.0037 (7) |
| C3 | 0.0152 (9) | 0.0147 (9) | 0.0224 (10) | 0.0005 (7) | −0.0038 (7) | −0.0063 (7) |
| C4 | 0.0106 (9) | 0.0193 (10) | 0.0216 (10) | 0.0008 (7) | −0.0044 (7) | −0.0053 (8) |
| C5 | 0.0141 (9) | 0.0144 (9) | 0.0228 (10) | 0.0002 (7) | −0.0041 (7) | −0.0019 (7) |
| C6 | 0.0160 (10) | 0.0167 (9) | 0.0252 (10) | 0.0015 (7) | −0.0040 (8) | −0.0090 (8) |
| C21 | 0.0251 (11) | 0.0192 (9) | 0.0177 (10) | 0.0014 (8) | −0.0028 (8) | −0.0068 (7) |
| Na1 | 0.0249 (5) | 0.0264 (4) | 0.0291 (5) | −0.0002 (3) | −0.0031 (3) | −0.0068 (3) |
| O1W | 0.0360 (9) | 0.0275 (8) | 0.0252 (8) | 0.0022 (6) | −0.0021 (7) | −0.0065 (6) |
| O2W | 0.0390 (9) | 0.0239 (8) | 0.0246 (8) | 0.0020 (6) | −0.0008 (7) | −0.0039 (6) |
| O3W | 0.0322 (9) | 0.0264 (8) | 0.0223 (8) | 0.0022 (6) | −0.0020 (6) | −0.0064 (6) |
| O4W | 0.0282 (8) | 0.0283 (8) | 0.0399 (9) | 0.0023 (6) | −0.0067 (7) | −0.0097 (7) |
| O5W | 0.0342 (9) | 0.0353 (9) | 0.0247 (8) | 0.0009 (7) | −0.0010 (7) | −0.0020 (7) |
| O6W | 0.0257 (8) | 0.0311 (8) | 0.0330 (9) | −0.0003 (6) | −0.0043 (7) | −0.0079 (6) |
| Na1—O1Wi | 2.4185 (16) | O4W—H42W | 0.9300 |
| Na1—O3Wii | 2.3803 (16) | O4W—H41W | 0.9900 |
| Na1—O1W | 2.3529 (16) | O5W—H52W | 0.9000 |
| Na1—O2W | 2.3183 (17) | O5W—H51W | 0.9000 |
| Na1—O3W | 2.3530 (16) | O6W—H61W | 0.9300 |
| Cl3—C3 | 1.7216 (18) | O6W—H62W | 0.9300 |
| Cl5—C5 | 1.7213 (18) | N1—C2 | 1.342 (2) |
| Cl6—C6 | 1.7289 (19) | N1—C6 | 1.330 (2) |
| O21—C21 | 1.243 (2) | N4—C4 | 1.342 (2) |
| O22—C21 | 1.250 (2) | N4—H41 | 0.9600 |
| O1W—H12W | 0.8900 | N4—H42 | 0.9700 |
| O1W—H11W | 0.8200 | C2—C3 | 1.370 (3) |
| O2W—H21W | 0.9400 | C2—C21 | 1.515 (3) |
| O2W—H22W | 0.8400 | C3—C4 | 1.407 (3) |
| O3W—H31W | 0.8800 | C4—C5 | 1.403 (2) |
| O3W—H32W | 0.9000 | C5—C6 | 1.376 (3) |
| O1Wi—Na1—O3Wii | 173.66 (6) | H41W—O4W—H42W | 103.00 |
| O1W—Na1—O3W | 114.69 (6) | H51W—O5W—H52W | 98.00 |
| O1W—Na1—O1Wi | 86.32 (5) | H61W—O6W—H62W | 116.00 |
| O1W—Na1—O3Wii | 100.02 (6) | C2—N1—C6 | 116.35 (16) |
| O2W—Na1—O3W | 141.97 (6) | C4—N4—H41 | 118.00 |
| O1Wi—Na1—O2W | 85.88 (6) | C4—N4—H42 | 118.00 |
| O2W—Na1—O3Wii | 92.71 (6) | H41—N4—H42 | 124.00 |
| O1W—Na1—O2W | 103.20 (6) | N1—C2—C3 | 123.14 (17) |
| O3W—Na1—O3Wii | 84.24 (5) | N1—C2—C21 | 115.53 (16) |
| O1Wi—Na1—O3W | 93.06 (5) | C3—C2—C21 | 121.32 (16) |
| Na1—O1W—Na1i | 93.68 (5) | Cl3—C3—C2 | 119.28 (14) |
| Na1—O3W—Na1ii | 95.76 (6) | Cl3—C3—C4 | 119.39 (14) |
| Na1—O1W—H11W | 100.00 | C2—C3—C4 | 121.32 (16) |
| Na1i—O1W—H11W | 121.00 | N4—C4—C3 | 122.49 (16) |
| Na1—O1W—H12W | 128.00 | N4—C4—C5 | 122.95 (17) |
| H11W—O1W—H12W | 112.00 | C3—C4—C5 | 114.55 (17) |
| Na1i—O1W—H12W | 103.00 | Cl5—C5—C4 | 118.07 (14) |
| Na1—O2W—H22W | 128.00 | Cl5—C5—C6 | 121.71 (14) |
| H21W—O2W—H22W | 97.00 | C4—C5—C6 | 120.22 (16) |
| Na1—O2W—H21W | 121.00 | Cl6—C6—N1 | 115.37 (15) |
| Na1—O3W—H32W | 119.00 | Cl6—C6—C5 | 120.21 (14) |
| H31W—O3W—H32W | 108.00 | N1—C6—C5 | 124.42 (17) |
| Na1—O3W—H31W | 109.00 | O21—C21—O22 | 127.24 (18) |
| Na1ii—O3W—H32W | 115.00 | O21—C21—C2 | 116.83 (17) |
| Na1ii—O3W—H31W | 109.00 | O22—C21—C2 | 115.91 (17) |
| O3Wii—Na1—O3W—Na1ii | 0.00 (6) | N1—C2—C21—O21 | 89.1 (2) |
| O1W—Na1—O1Wi—Na1i | 0.00 (6) | N1—C2—C3—Cl3 | 179.26 (15) |
| O2W—Na1—O1Wi—Na1i | −103.53 (6) | N1—C2—C3—C4 | 0.0 (3) |
| O3W—Na1—O1Wi—Na1i | 114.57 (6) | C21—C2—C3—Cl3 | 0.7 (3) |
| O1W—Na1—O3Wii—Na1ii | 114.11 (6) | C3—C2—C21—O22 | 89.4 (2) |
| O2W—Na1—O3Wii—Na1ii | −141.98 (6) | N1—C2—C21—O22 | −89.3 (2) |
| O3W—Na1—O3Wii—Na1ii | −0.02 (8) | C3—C2—C21—O21 | −92.2 (2) |
| O2W—Na1—O3W—Na1ii | 87.03 (10) | C2—C3—C4—C5 | 0.1 (3) |
| O1Wi—Na1—O3W—Na1ii | 174.25 (5) | Cl3—C3—C4—N4 | 0.6 (3) |
| O2W—Na1—O1W—Na1i | 84.89 (6) | Cl3—C3—C4—C5 | −179.13 (15) |
| O3W—Na1—O1W—Na1i | −91.68 (6) | C2—C3—C4—N4 | 179.9 (2) |
| O1Wi—Na1—O1W—Na1i | 0.00 (5) | C3—C4—C5—Cl5 | 179.71 (15) |
| O3Wii—Na1—O1W—Na1i | −179.91 (5) | N4—C4—C5—Cl5 | −0.1 (3) |
| O1W—Na1—O3W—Na1ii | −98.40 (6) | N4—C4—C5—C6 | −180.0 (2) |
| C6—N1—C2—C21 | 178.63 (17) | C3—C4—C5—C6 | −0.2 (3) |
| C2—N1—C6—Cl6 | −179.62 (14) | C4—C5—C6—N1 | 0.2 (3) |
| C6—N1—C2—C3 | 0.0 (3) | Cl5—C5—C6—Cl6 | −0.2 (3) |
| C2—N1—C6—C5 | −0.1 (3) | Cl5—C5—C6—N1 | −179.72 (15) |
| C21—C2—C3—C4 | −178.59 (18) | C4—C5—C6—Cl6 | 179.74 (16) |
| H··· | ||||
| O1 | 0.82 | 1.97 | 2.786 (2) | 178 |
| O1 | 0.89 | 1.99 | 2.877 (2) | 174 |
| O2 | 0.94 | 1.79 | 2.721 (2) | 171 |
| O2 | 0.84 | 1.98 | 2.816 (2) | 172 |
| O3 | 0.88 | 1.93 | 2.781 (2) | 163 |
| O3 | 0.90 | 2.02 | 2.910 (2) | 170 |
| O4 | 0.99 | 1.93 | 2.916 (2) | 173 |
| O4 | 0.93 | 1.99 | 2.918 (2) | 174 |
| O5 | 0.90 | 1.87 | 2.748 (2) | 166 |
| O5 | 0.90 | 2.01 | 2.8481 (19) | 155 |
| O6 | 0.93 | 2.10 | 2.972 (2) | 156 |
| O6 | 0.93 | 2.83 | 3.4400 (15) | 124 |
| O6 | 0.93 | 2.19 | 2.996 (2) | 144 |
| N4—H41···Cl3 | 0.96 | 2.54 | 2.9956 (17) | 109 |
| N4—H41···O6 | 0.96 | 2.18 | 3.080 (2) | 156 |
| N4—H42···Cl5 | 0.97 | 2.52 | 2.9690 (17) | 108 |
| N4—H42···O4 | 0.97 | 2.22 | 3.146 (2) | 160 |