| Literature DB >> 26392851 |
Sanvidhan G Suke1, Prabhat Kosta2, Harsh Negi3.
Abstract
Pharmacovigilance (PV) plays a key role in the healthcare system through assessment, monitoring and discovery of interactions amongst drugs and their effects in human. Pharmaceutical and biotechnological medicines are designed to cure, prevent or treat diseases; however, there are also risks particularly adverse drug reactions (ADRs) can cause serious harm to patients. Thus, for safety medication ADRs monitoring required for each medicine throughout its life cycle, during development of drug such as pre-marketing including early stages of drug design, clinical trials, and post-marketing surveillance. PV is concerns with the detection, assessment, understanding and prevention of ADRs. Pharmacogenetics and pharmacogenomics are an indispensable part of the clinical research. Variation in the human genome is a cause of variable response to drugs and susceptibility to diseases are determined, which is important for early drug discovery to PV. Moreover, PV has traditionally involved in mining spontaneous reports submitted to national surveillance systems. The research focus is shifting toward the use of data generated from platforms outside the conventional framework such as electronic medical records, biomedical literature, and patient-reported data in health forums. The emerging trend in PV is to link premarketing data with human safety information observed in the post-marketing phase. The PV system team obtains valuable additional information, building up the scientific data contained in the original report and making it more informative. This necessitates an utmost requirement for effective regulations of the drug approval process and conscious pre and post approval vigilance of the undesired effects, especially in India. Adverse events reported by PV system potentially benefit to the community due to their proximity to both population and public health practitioners, in terms of language and knowledge, enables easy contact with reporters by electronically. Hence, PV helps to the patients get well and to manage optimally or ideally, avoid illness is a collective responsibility of industry, drug regulators, clinicians and other healthcare professionals to enhance their contribution to public health. This review summarized objectives and methodologies used in PV with critical overview of existing PV in India, challenges to overcome and future prospects with respect to Indian context.Entities:
Keywords: Adverse drug reaction; Clinical trials; Data mining; Indian Pharmacopoeia Commission; Pharmacogenomics; Pharmacovigilance
Year: 2015 PMID: 26392851 PMCID: PMC4576445 DOI: 10.5210/ojphi.v7i2.5595
Source DB: PubMed Journal: Online J Public Health Inform ISSN: 1947-2579
Figure 1A typical pharmacovigilance setup
Figure 2Therapeutic area wise distribution of clinical trials outsourced to India.
Figure 3The pathways of pharmacogenomic research in clinical
Figure 4Adverse drug reactions online information tracking and yellow card system Sources of data
Figure 5Adverse drug reactions online information tracking and yellow card system Sources of data
Figure 6Adverse Drug Reaction reporting form
Figure 7Pharmacovigilance systematic methods for the Evaluation of Spontaneous Reports collected from different data sources.
Figure 8National Pharmacovigilance Program zone structure
Figure 9Targets for the Pharmacovigilance Program in India
Figure 10Pharmacovigilance program in India and responsibilities.
Figure 11Governance structure
Figure 12ADR data Program Communications
Roles of various regulatory agencies
| Agencies | Role of agencies |
| Drug Controller General of India | Implementation the National Pharmacovigilance |
| Central Drugs Standard Control | Operate under the supervision of the National Pharmacovigilance Advisory Committee to recommend. |
| Department of Biotechnology (DBT) | Provides product evaluation and validation through support for limited and large scale field trials for agriculture products and clinical trials for health care products. |
| Ministry of Environment & Forests
| Project advisory committee approves guidelines for making data entries of the information provided by the environmental experts through the field trials for agriculture products and clinical trials for health care products. |
| Indian Council of Medical Research | Brought
out the 'Policy Statement on Ethical Considerations involved in
Research on Human |
| Central Bureau of Narcotics | Closely monitors all clinical trials, which require additional narcotics compliances relating to storage, import-export quotas and movement of the investigational drug. |
| Ministry of Health and Family Welfare (MHFW) | An autonomous body for setting of standards for drugs, pharmaceuticals and healthcare devices and technologies in India. |
| National Pharmacovigilance Advisory | Collates,
analyzes and archives adverse drug |
Techniques for genotype analysis in pharmacogenetics and genomics
| Methods | Short description and purpose |
| PCR | PCR, basic technique in almost all current pharmacogenetic and genomic analysis. |
| PCR-RFLP | The polymorphic genomic region is amplified by PCR and cut by sequence-specific enzymes (restriction endonucleases). The resulting fragments are analyzed by electrophoresis and are indicative of the genotypes. |
| qPCR (real-time PCR) | Detection of the PCR product formation while PCR reaction proceeds using various fluorescence quenching or fluorescence energy transfer techniques for genotyping of single SNPs in many samples. |
| qRT-PCR (quantitative reverse transcriptase PCR) | Used to quantify amounts of transcripts in a sample after a reverse transcription reaction. Useful for quantification of RNAs in big numbers of samples. |
| Denaturing high performance liquid chromatography (DHPLC) | Variant and wild-type DNA forms differently shaped hybrid molecules (homoduplex versus heteroduplex) which can be separated by ion-pair reverse phase HPLC to identify polymorphisms. |
| Sanger di-deoxy (end terminal) sequencing | Reading of DNA sequences, identification of new polymorphisms. |
| Single-base (primer) extension (known as mini-sequencing) | Short oligonucleotides are annealed so that their 3’-end directly upstream the polymorphic site. Elongation of only one single base is performed by using a mixture of (fluorescently labeled) ddNTPs without dNTPs. The products can be detected either with sequencing or using MALDI-TOF detection system. |
| DNA microarrays | Microarray
solid-phase bound DNA molecules to |
| Pyrosequencing | A method of DNA sequencing based on the sequencing by synthesis principle. Used in SNP genotyping and DNA methylation analyses. The principle behind this method is also the basis of the current large-scale DNA sequencing known as 454 “next generation” capable of sequencing more than 100 million basepairs per day. |
Bioinformatics databases and software tools for pharmacogenetics and genomics
| Aim | Computer solution | Website |
|
| ||
| Human genome | National Center for Biotechnology Information in USA (NCBI) |
|
| SNP databases | dbSNP at NCBI |
|
| Pairwise linkage disequilibrium | HapMap project |
|
| Gene expression analysis | Gene Expression Omnibus (GEO) By NCBI |
|
| Metabolic pathways | Kyoto Encyclopedia of Genes and Genomes (KEGG) |
|
|
| ||
| Homology search | BLAST at NCBI |
|
| Sequence alignment and identification of | Gap4 (part of Staden package) |
|
| Haplotype mapping | Phase, Fastphase |
|
| Pairwise linkage disequilibrium | Haploview |
|
| Extended haplotype homozygosity (EHH) | Sweep |
|
| Analysis of SNPs affecting promoter function | TRANSFAC |
|
| Analysis of SNPs affecting splice sites | Automated Splice Site Analyses |
|
Summarizing the Role of PGx in PV
| Pharmacogenomics (PGx) and Pharmacogenetics (PG) Drug effects |
| 1. If the safety or efficacy of a drug may depend on genetic polymorphisms, the best choices are either to delete the drug from the market or to analyse and consider the genetic polymorphism in therapy. |
| 2. PGx and genomics are the most important reasons behind interethnic differences in drug effects. Thus, PG has to be carefully studied in worldwide marketing of drugs and in PV. |
| 3. Many PG polymorphisms may have both positive and negative consequences for human health depending on the context and exposures. |
| 4. Applying PG knowledge in the clinics should not always mean applying genotyping, often some type of phenotyping may be superior. |
| 5. Clinical study should know about the background and clinical consequences of genetic polymorphisms in G6PDH, BCHE, NAT2, CYP2D6, CYP2C19, CYP2C9, TPMT, DPD, UGT1A1, VKORC1 and factor V. Very soon that list may have to be updated. |
| 6. As with many complex and new technologies, there are problems and delays in the transfer of scientific PG knowledge to the bedside. Specific translational research has to be supported. |
| 7. The PG diagnostics will have to be based on scientifically valid mechanistic reasoning and appropriate clinical monitoring. |
| 8. In addition to concentrating on single genes, PG and genomic pathway research is required to understand the causes behind pharmacokinetic and pharmacodynamic inter-individual variation. |
| 9. Because of the mass of PG information, medical information technologies including bioinformatics are essential in the future of clinical PG. |
| 10. Besides the traditional axis between genes - mRNAs - proteins and functions, other mechanisms such as epigenetics and RNAi, are apparently relevant for understanding of interindividual variation in drug effects and adverse effects. |
| 11. The future of PG and genomic research will be a mixture of genome-wide SNP and expression analysis in appropriately designed clinical studies, and this will have to be combined with in vitro and ex vivo PGx research with human cells and model organisms and with human clinical research. Finding the right combination of research tools may be the most important demand. |
| Year | Event |
| 1747 | First reported clinical trials by James Lind, proving the effectiveness of lemon juice in preventing scurvy. |
| 1937 | Death of 107 children due to sulfanilamide toxicity. |
| 1950 | Apalstic anemia reported due to chloramphenicol |
| 1961 | Global disaster due to thalidomide toxicity |
| 1963 | 16th World Health Assembly recognize to rapid action on ADR’s |
| 1968 | WHO pilot research project for international drug monitoring |
| 1996 | Clinical trials of global standards started in India |
| 1997 | India joined WHO Adverse Drug Reaction Monitoring Program |
| 1998 | Pharmacovigilance initiated in India |
| 2002 | 67th National Pharmacovigilance Center established in India. |
| 2004-05 | National Pharmacovigilance Program launched in India |
| 2005 | Conduct of structured clinical trials in India |
| 2009-10 | PVPI initiated |