Literature DB >> 26387102

NMR Spectroscopic Studies of the Conformational Ensembles of Intrinsically Disordered Proteins.

Dennis Kurzbach1, Georg Kontaxis1, Nicolas Coudevylle1, Robert Konrat2.   

Abstract

Intrinsically disordered proteins (IDPs) are characterized by substantial conformational flexibility and thus not amenable to conventional structural biology techniques. Given their inherent structural flexibility NMR spectroscopy offers unique opportunities for structural and dynamic studies of IDPs. The past two decades have witnessed significant development of NMR spectroscopy that couples advances in spin physics and chemistry with a broad range of applications. This chapter will summarize key advances in NMR methodology. Despite the availability of efficient (multi-dimensional) NMR experiments for signal assignment of IDPs it is discussed that NMR of larger and more complex IDPs demands spectral simplification strategies capitalizing on specific isotope-labeling strategies. Prototypical applications of isotope labeling-strategies are described. Since IDP-ligand association and dissociation processes frequently occur on time scales that are amenable to NMR spectroscopy we describe in detail the application of CPMG relaxation dispersion techniques to studies of IDP protein binding. Finally, we demonstrate that the complementary usage of NMR and EPR data provide a more comprehensive picture about the conformational states of IDPs and can be employed to analyze the conformational ensembles of IDPs.

Entities:  

Keywords:  Biomolecular NMR; EPR spectroscopy; Intrinsically disordered proteins; NMR spin relaxation; Paramagnetic relaxation; Protein meta-structure

Mesh:

Substances:

Year:  2015        PMID: 26387102     DOI: 10.1007/978-3-319-20164-1_5

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  8 in total

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Review 2.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

Review 3.  Single Molecule FRET: A Powerful Tool to Study Intrinsically Disordered Proteins.

Authors:  Sharonda J LeBlanc; Prakash Kulkarni; Keith R Weninger
Journal:  Biomolecules       Date:  2018-11-08

Review 4.  Fatal Attraction: The Case of Toxic Soluble Dimers of Truncated PQBP-1 Mutants in X-Linked Intellectual Disability.

Authors:  Yu Wai Chen; Shah Kamranur Rahman
Journal:  Int J Mol Sci       Date:  2021-02-24       Impact factor: 5.923

5.  Integrative structural dynamics probing of the conformational heterogeneity in synaptosomal-associated protein 25.

Authors:  Nabanita Saikia; Inna S Yanez-Orozco; Ruoyi Qiu; Pengyu Hao; Sergey Milikisiyants; Erkang Ou; George L Hamilton; Keith R Weninger; Tatyana I Smirnova; Hugo Sanabria; Feng Ding
Journal:  Cell Rep Phys Sci       Date:  2021-10-15

6.  eIF4G1 N-terminal intrinsically disordered domain is a multi-docking station for RNA, Pab1, Pub1, and self-assembly.

Authors:  Belén Chaves-Arquero; Santiago Martínez-Lumbreras; Nathalie Sibille; Sergio Camero; Pau Bernadó; M Ángeles Jiménez; Silvia Zorrilla; José Manuel Pérez-Cañadillas
Journal:  Front Mol Biosci       Date:  2022-09-23

7.  DNP-Enhanced MAS NMR: A Tool to Snapshot Conformational Ensembles of α-Synuclein in Different States.

Authors:  Boran Uluca; Thibault Viennet; Dušan Petrović; Hamed Shaykhalishahi; Franziska Weirich; Ayşenur Gönülalan; Birgit Strodel; Manuel Etzkorn; Wolfgang Hoyer; Henrike Heise
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

8.  Impact of the Hereditary P301L Mutation on the Correlated Conformational Dynamics of Human Tau Protein Revealed by the Paramagnetic Relaxation Enhancement NMR Experiments.

Authors:  Ryosuke Kawasaki; Shin-Ichi Tate
Journal:  Int J Mol Sci       Date:  2020-05-30       Impact factor: 5.923

  8 in total

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