| Literature DB >> 26387083 |
Guang Yang1, Ming-Ming Lei2, Chun-Lei Yu3, Xiao-Xiao Liu4, Zhe An5, Chun-Li Song2.
Abstract
BACKGROUND: Triglycerides (TGs) are proatherogenic lipoproteins involving the risk of coronary heart disease (CHD), while apolipoprotein A5 (APOA5) and apolipoprotein C3 (APOC3) are main lipoproteins composing TG-rich lipoproteins. In this study, we aim to explore the correlation of CHD with APOA5 -1131 T > C and APOC3 -455 T > C single nucleotide polymorphisms (SNPs).Entities:
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Year: 2015 PMID: 26387083 PMCID: PMC4575483 DOI: 10.1186/s12944-015-0110-6
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Primer sequencing of ApolipoproteinA5 (APOA5) -1131 T > C and apolipoproteinC3 (APOC3) -455 T > C single nucleotide polymorphisms (SNPs)
| SNP | Primer | Fragment length (bp) | Annealing (°C) | Cycles |
|---|---|---|---|---|
| −1131 T > C (rs662799) | F: 5′-GATTGATTCAAGATGCATTTAGGAC-3′ | 188 | 59 | 35 |
| R: 5′-CCCCAGGAACTGGAGCGAAATT-3′ | ||||
| −455 T > C (rs2854116) | F: 5′- GCACTCGCCTGCCTGGATT-3′ | 413 | 60 | 35 |
| R: 5′- TGATGCCACGCTGCTGTCCC-3′ |
F forward, R reverse, SNP single nucleotide polymorphism
Fig. 1Gel electrophoresis of apolipoprotein A5 (APOA5) -1131 T > C (rs662799) and apolipoprotein C3 (APOC3) -455 T > C (rs2854116) single nucleotide polymorphisms (SNPs) after enzyme digestion (a: -1131 T > C (rs662799) of APOA5; b: -455 T > C (rs2854116) of APOC3)
Comparison of clinical data and biochemical index between case and control groups (mean ± standard deviation)
| Parameters | Case group ( | Control group ( |
|
|---|---|---|---|
| Mean age | 62.76 ± 9.98 | 62.44 ± 10.16 | 0.7413 |
| Sex (n, %) | |||
| M | 141 (67.1 %) | 139 (62.3 %) | 0.2952 |
| F | 69 (32.9 %) | 84 (37.7 %) | |
| Smoking status (n, %) | |||
| Yes | 113 (53.8 %) | 61 (27.4 %) | < 0.0001 |
| No | 97 (46.2 %) | 162 (72.6 %) | |
| Drinking status (n, %) | |||
| Yes | 128 (61.0 %) | 93 (41.7 %) | < 0.0001 |
| No | 82 (39.0 %) | 130 (58.3 %) | |
| Hypertension status (n, %) | |||
| Yes | 140 (66.7 %) | 70 (31.4 %) | < 0.0001 |
| No | 70 (33.3 %) | 153 (68.6 %) | |
| Diabetes mellitus (n, %) | |||
| Yes | 36 (17.1 %) | 8 (3.6 %) | < 0.0001 |
| No | 174 (82.9 %) | 215 (96.4 %) | |
| TG (mmol/L) | 2.41 ± 1.33 | 1.64 ± 1.00 | < 0.0001 |
| TC (mmol/L) | 4.74 ± 0.98 | 5.05 ± 0.89 | 0.0006 |
| HDL-C (mmol/L) | 0.97 ± 0.32 | 1.33 ± 0.32 | < 0.0001 |
| LDL-C (mmol/L) | 2.81 ± 0.76 | 3.07 ± 0.75 | 0.0004 |
| FBS (mmol/L) | 6.30 ± 1.60 | 5.08 ± 0.62 | < 0.0001 |
| BMI (kg/m2) | 25.77 ± 3.21 | 24.29 ± 2.72 | < 0.0001 |
M male, F female, TG triglyceride, TC total cholesterol, HDL-C high-density lipoprotein cholesterol, LDL-C low-density lipoprotein cholesterol, FBS fasting blood sugar, BMI body mass index
Distribution frequencies of genotypes in both apolipoproteinA5 (APOA5) -1131 T > C and apolipoproteinC3 (APOC3) -455 T > C single nucleotide polymorphisms (SNPs) between case and control groups
| SNP | Control group ( | Case group ( |
| OR | 95 % CI |
|---|---|---|---|---|---|
| −1131 T > C (rs662799) | |||||
| TT | 96 (43.0 %) | 69 (32.9 %) | Ref | ||
| TC | 107 (48.0 %) | 101 (48.1 %) | 0.194 | 1.313 | 0.870 ~ 1.983 |
| CC | 20 (9.0 %) | 40 (19.0 %) | 0.001 | 2.783 | 1.497 ~ 5.171 |
| TT | 96 (43.0 %) | 69 (32.9 %) | Ref | ||
| TC + CC | 127 (57.0 %) | 141 (67.1 %) | 0.029 | 1.545 | 1.044 ~ 2.285 |
| T | 299 (67.0 %) | 239 (56.9 %) | Ref | ||
| C | 147 (33.0 %) | 181 (43.1 %) | 0.002 | 1.54 | 1.169 ~ 2.031 |
| −455 T > C (rs2854116) | |||||
| TT | 102 (45.7 %) | 75 (35.7 %) | Ref | ||
| TC | 101 (45.3 %) | 97 (46.2 %) | 0.199 | 1.306 | 0.868 ~ 1.965 |
| CC | 20 (9.0 %) | 38 (18.1 %) | 0.002 | 2.584 | 1.392 ~ 4.795 |
| TT | 102 (45.7 %) | 75 (35.7 %) | Ref | ||
| TC + CC | 121 (54.3 %) | 135 (64.3 %) | 0.034 | 1.517 | 1.031 ~ 2.233 |
| T | 305 (68.4 %) | 247 (58.8 %) | Ref | ||
| C | 141 (31.6 %) | 173 (41.2 %) | 0.003 | 1.515 | 1.147 ~ 2.002 |
SNP single nucleotide polymorphis
Fig. 2Forest plots showing the correlations between apolipoprotein A5 (APOA5) -1131 T > C (rs662799) single nucleotide polymorphisms (SNPs) and coronary heart disease (a: allele model; b: dominant model)
Fig. 3Forest plots showing the correlations between apolipoprotein C3 (APOC3) -455 T > C (rs2854116) single nucleotide polymorphisms (SNPs) and coronary heart disease (a: allele model; b: dominant model)