Literature DB >> 26382703

Contribution of Water to Pressure and Cold Denaturation of Proteins.

Valentino Bianco1, Giancarlo Franzese1.   

Abstract

The mechanisms of cold and pressure denaturation of proteins are matter of debate and are commonly understood as due to water-mediated interactions. Here, we study several cases of proteins, with or without a unique native state, with or without hydrophilic residues, by means of a coarse-grain protein model in explicit solvent. We show, using Monte Carlo simulations, that taking into account how water at the protein interface changes its hydrogen bond properties and its density fluctuations is enough to predict protein stability regions with elliptic shapes in the temperature-pressure plane, consistent with previous theories. Our results clearly identify the different mechanisms with which water participates to denaturation and open the perspective to develop advanced computational design tools for protein engineering.

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Year:  2015        PMID: 26382703     DOI: 10.1103/PhysRevLett.115.108101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  8 in total

1.  Computational investigation of cold denaturation in the Trp-cage miniprotein.

Authors:  Sang Beom Kim; Jeremy C Palmer; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

2.  Mechanism and Determinants of Amphipathic Helix-Containing Protein Targeting to Lipid Droplets.

Authors:  Coline Prévost; Morris E Sharp; Nora Kory; Qingqing Lin; Gregory A Voth; Robert V Farese; Tobias C Walther
Journal:  Dev Cell       Date:  2018-01-08       Impact factor: 12.270

3.  The cold denaturation of IscU highlights structure-function dualism in marginally stable proteins.

Authors:  Robert Yan; Paolo DeLos Rios; Annalisa Pastore; Piero Andrea Temussi
Journal:  Commun Chem       Date:  2018-04-05

4.  A Tale of Two Desolvation Potentials: An Investigation of Protein Behavior under High Hydrostatic Pressure.

Authors:  Andrei G Gasic; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2020-02-24       Impact factor: 2.991

5.  Thermodynamic properties of amyloid fibrils in equilibrium.

Authors:  Tomaz Urbic; Sara Najem; Cristiano L Dias
Journal:  Biophys Chem       Date:  2017-03-07       Impact factor: 2.352

6.  Protein Unfolding and Aggregation near a Hydrophobic Interface.

Authors:  David March; Valentino Bianco; Giancarlo Franzese
Journal:  Polymers (Basel)       Date:  2021-01-03       Impact factor: 4.329

7.  Towards a structural biology of the hydrophobic effect in protein folding.

Authors:  Carlo Camilloni; Daniela Bonetti; Angela Morrone; Rajanish Giri; Christopher M Dobson; Maurizio Brunori; Stefano Gianni; Michele Vendruscolo
Journal:  Sci Rep       Date:  2016-07-27       Impact factor: 4.379

8.  Hydration Layer of Only a Few Molecules Controls Lipid Mobility in Biomimetic Membranes.

Authors:  Madhurima Chattopadhyay; Emilia Krok; Hanna Orlikowska; Petra Schwille; Henri G Franquelim; Lukasz Piatkowski
Journal:  J Am Chem Soc       Date:  2021-08-03       Impact factor: 15.419

  8 in total

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