Literature DB >> 26381541

De novo peroxisome biogenesis: Evolving concepts and conundrums.

Gaurav Agrawal1, Suresh Subramani2.   

Abstract

Peroxisomes proliferate by growth and division of pre-existing peroxisomes or could arise de novo. Though the de novo pathway of peroxisome biogenesis is a more recent discovery, several studies have highlighted key mechanistic details of the pathway. The endoplasmic reticulum (ER) is the primary source of lipids and proteins for the newly-formed peroxisomes. More recently, an intricate sorting process functioning at the ER has been proposed, that segregates specific PMPs first to peroxisome-specific ER domains (pER) and then assembles PMPs selectively into distinct pre-peroxisomal vesicles (ppVs) that later fuse to form import-competent peroxisomes. In addition, plausible roles of the three key peroxins Pex3, Pex16 and Pex19, which are also central to the growth and division pathway, have been suggested in the de novo process. In this review, we discuss key developments and highlight the unexplored avenues in de novo peroxisome biogenesis.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  De novo peroxisome biogenesis; Intra-ER sorting, import of PMPs into the ER, growth and division vs de novo peroxisome biogenesis; Pre-peroxisomal vesicles, ppVs; Pre-peroxisomal-ER, pER; Role of endoplasmic reticulum in peroxisome biogenesis, peroxisomal membrane protein biogenesis; Role of the endoplasmic reticulum in yeast, mammals and plants

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Year:  2015        PMID: 26381541      PMCID: PMC4791208          DOI: 10.1016/j.bbamcr.2015.09.014

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  104 in total

1.  A stretch of positively charged amino acids at the N terminus of Hansenula polymorpha Pex3p is involved in incorporation of the protein into the peroxisomal membrane.

Authors:  R J Baerends; K N Faber; A M Kram; J A Kiel; I J van der Klei; M Veenhuis
Journal:  J Biol Chem       Date:  2000-04-07       Impact factor: 5.157

Review 2.  Peroxisomes start their life in the endoplasmic reticulum.

Authors:  Henk F Tabak; Jean L Murk; Ineke Braakman; Hans J Geuze
Journal:  Traffic       Date:  2003-08       Impact factor: 6.215

3.  Peroxisome remnants in pex3delta cells and the requirement of Pex3p for interactions between the peroxisomal docking and translocation subcomplexes.

Authors:  Partha P Hazra; Ivet Suriapranata; William B Snyder; Suresh Subramani
Journal:  Traffic       Date:  2002-08       Impact factor: 6.215

Review 4.  The importomer--a peroxisomal membrane complex involved in protein translocation into the peroxisome matrix.

Authors:  Naganand Rayapuram; Suresh Subramani
Journal:  Biochim Biophys Acta       Date:  2006-08-30

5.  The length of cargo-protein transmembrane segments drives secretory transport by facilitating cargo concentration in export domains.

Authors:  Anna Dukhovny; Yakey Yaffe; Jeanne Shepshelovitch; Koret Hirschberg
Journal:  J Cell Sci       Date:  2009-05-12       Impact factor: 5.285

6.  Analysis of human Pex19p's domain structure by pentapeptide scanning mutagenesis.

Authors:  Marc Fransen; Ilse Vastiau; Chantal Brees; Vanessa Brys; Guy P Mannaerts; Paul P Van Veldhoven
Journal:  J Mol Biol       Date:  2005-01-28       Impact factor: 5.469

Review 7.  Nutritional control of growth and development in yeast.

Authors:  James R Broach
Journal:  Genetics       Date:  2012-09       Impact factor: 4.562

8.  Biosynthesis of glyoxysomal proteins.

Authors:  H Kindl; C Kruse
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

Review 9.  Dynamics of peroxisome assembly and function.

Authors:  V I Titorenko; R A Rachubinski
Journal:  Trends Cell Biol       Date:  2001-01       Impact factor: 20.808

10.  Sorting pathway and molecular targeting signals for the Arabidopsis peroxin 3.

Authors:  Joanne E Hunt; Richard N Trelease
Journal:  Biochem Biophys Res Commun       Date:  2004-02-06       Impact factor: 3.575

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  40 in total

1.  Peroxisome-derived lipids regulate adipose thermogenesis by mediating cold-induced mitochondrial fission.

Authors:  Hongsuk Park; Anyuan He; Min Tan; Jordan M Johnson; John M Dean; Terri A Pietka; Yali Chen; Xiangyu Zhang; Fong-Fu Hsu; Babak Razani; Katsuhiko Funai; Irfan J Lodhi
Journal:  J Clin Invest       Date:  2019-01-14       Impact factor: 14.808

Review 2.  The making of a mammalian peroxisome, version 2.0: mitochondria get into the mix.

Authors:  Michael Schrader; Luca Pellegrini
Journal:  Cell Death Differ       Date:  2017-04-14       Impact factor: 15.828

3.  Newly born peroxisomes are a hybrid of mitochondrial and ER-derived pre-peroxisomes.

Authors:  Ayumu Sugiura; Sevan Mattie; Julien Prudent; Heidi M McBride
Journal:  Nature       Date:  2017-02-01       Impact factor: 49.962

Review 4.  Peroxisome biogenesis, membrane contact sites, and quality control.

Authors:  Jean-Claude Farré; Shanmuga S Mahalingam; Marco Proietto; Suresh Subramani
Journal:  EMBO Rep       Date:  2018-12-10       Impact factor: 8.807

Review 5.  Balancing the Opposing Principles That Govern Peroxisome Homeostasis.

Authors:  Shanmuga S Mahalingam; Nandini Shukla; Jean-Claude Farré; Katarzyna Zientara-Rytter; Suresh Subramani
Journal:  Trends Biochem Sci       Date:  2020-10-09       Impact factor: 13.807

6.  Functional regions of the peroxin Pex19 necessary for peroxisome biogenesis.

Authors:  Gaurav Agrawal; Helen H Shang; Zhi-Jie Xia; Suresh Subramani
Journal:  J Biol Chem       Date:  2017-05-19       Impact factor: 5.157

7.  Cell biology: Organelle formation from scratch.

Authors:  Ewald H Hettema; Stephen J Gould
Journal:  Nature       Date:  2017-02-01       Impact factor: 49.962

8.  PEX16 contributions to peroxisome import and metabolism revealed by viable Arabidopsis pex16 mutants.

Authors:  Sarah E Burkhart; Roxanna J Llinas; Bonnie Bartel
Journal:  J Integr Plant Biol       Date:  2019-04-03       Impact factor: 7.061

9.  A New Yeast Peroxin, Pex36, a Functional Homolog of Mammalian PEX16, Functions in the ER-to-Peroxisome Traffic of Peroxisomal Membrane Proteins.

Authors:  Jean-Claude Farré; Krypton Carolino; Oleh V Stasyk; Olena G Stasyk; Zlatan Hodzic; Gaurav Agrawal; Andreas Till; Marco Proietto; James Cregg; Andriy A Sibirny; Suresh Subramani
Journal:  J Mol Biol       Date:  2017-10-14       Impact factor: 5.469

10.  Evaluation of the sub-optimal induction strategies for heterologous proteins production by Pichia pastoris Mut+/MutS strains and related transcriptional and metabolic analysis.

Authors:  Luqiang Jia; Minjie Gao; Jian Yan; Shanshan Chen; Jiaowen Sun; Qiang Hua; Jian Ding; Zhongping Shi
Journal:  World J Microbiol Biotechnol       Date:  2018-11-21       Impact factor: 3.312

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