Literature DB >> 26371284

Targeting the undruggable: immunotherapy meets personalized oncology in the genomic era.

S D Martin1, G Coukos2, R A Holt3, B H Nelson4.   

Abstract

Owing to recent advances in genomic technologies, personalized oncology is poised to fundamentally alter cancer therapy. In this paradigm, the mutational and transcriptional profiles of tumors are assessed, and personalized treatments are designed based on the specific molecular abnormalities relevant to each patient's cancer. To date, such approaches have yielded impressive clinical responses in some patients. However, a major limitation of this strategy has also been revealed: the vast majority of tumor mutations are not targetable by current pharmacological approaches. Immunotherapy offers a promising alternative to exploit tumor mutations as targets for clinical intervention. Mutated proteins can give rise to novel antigens (called neoantigens) that are recognized with high specificity by patient T cells. Indeed, neoantigen-specific T cells have been shown to underlie clinical responses to many standard treatments and immunotherapeutic interventions. Moreover, studies in mouse models targeting neoantigens, and early results from clinical trials, have established proof of concept for personalized immunotherapies targeting next-generation sequencing identified neoantigens. Here, we review basic immunological principles related to T-cell recognition of neoantigens, and we examine recent studies that use genomic data to design personalized immunotherapies. We discuss the opportunities and challenges that lie ahead on the road to improving patient outcomes by incorporating immunotherapy into the paradigm of personalized oncology.
© The Author 2015. Published by Oxford University Press on behalf of the European Society for Medical Oncology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  T cell; cancer; immunotherapy; neoantigen; next-generation sequencing; personalized oncology

Mesh:

Substances:

Year:  2015        PMID: 26371284      PMCID: PMC4658541          DOI: 10.1093/annonc/mdv382

Source DB:  PubMed          Journal:  Ann Oncol        ISSN: 0923-7534            Impact factor:   32.976


  91 in total

1.  Mutant MHC class II epitopes drive therapeutic immune responses to cancer.

Authors:  Sebastian Kreiter; Mathias Vormehr; Niels van de Roemer; Mustafa Diken; Martin Löwer; Jan Diekmann; Sebastian Boegel; Barbara Schrörs; Fulvia Vascotto; John C Castle; Arbel D Tadmor; Stephen P Schoenberger; Christoph Huber; Özlem Türeci; Ugur Sahin
Journal:  Nature       Date:  2015-04-22       Impact factor: 49.962

2.  Specific lymphocyte subsets predict response to adoptive cell therapy using expanded autologous tumor-infiltrating lymphocytes in metastatic melanoma patients.

Authors:  Laszlo G Radvanyi; Chantale Bernatchez; Minying Zhang; Patricia S Fox; Priscilla Miller; Jessica Chacon; Richard Wu; Gregory Lizee; Sandy Mahoney; Gladys Alvarado; Michelle Glass; Valen E Johnson; John D McMannis; Elizabeth Shpall; Victor Prieto; Nicholas Papadopoulos; Kevin Kim; Jade Homsi; Agop Bedikian; Wen-Jen Hwu; Sapna Patel; Merrick I Ross; Jeffrey E Lee; Jeffrey E Gershenwald; Anthony Lucci; Richard Royal; Janice N Cormier; Michael A Davies; Rahmatu Mansaray; Orenthial J Fulbright; Christopher Toth; Renjith Ramachandran; Seth Wardell; Audrey Gonzalez; Patrick Hwu
Journal:  Clin Cancer Res       Date:  2012-10-02       Impact factor: 12.531

Review 3.  T-cell epitope discovery technologies.

Authors:  Govinda Sharma; Robert A Holt
Journal:  Hum Immunol       Date:  2014-04-19       Impact factor: 2.850

4.  Clonal evolution of high-grade serous ovarian carcinoma from primary to recurrent disease.

Authors:  Mauro Castellarin; Katy Milne; Thomas Zeng; Kane Tse; Michael Mayo; Yongjun Zhao; John R Webb; Peter H Watson; Brad H Nelson; Robert A Holt
Journal:  J Pathol       Date:  2012-11-29       Impact factor: 7.996

5.  Cancer regression and neurological toxicity following anti-MAGE-A3 TCR gene therapy.

Authors:  Richard A Morgan; Nachimuthu Chinnasamy; Daniel Abate-Daga; Alena Gros; Paul F Robbins; Zhili Zheng; Mark E Dudley; Steven A Feldman; James C Yang; Richard M Sherry; Giao Q Phan; Marybeth S Hughes; Udai S Kammula; Akemi D Miller; Crystal J Hessman; Ashley A Stewart; Nicholas P Restifo; Martha M Quezado; Meghna Alimchandani; Avi Z Rosenberg; Avindra Nath; Tongguang Wang; Bibiana Bielekova; Simone C Wuest; Nirmala Akula; Francis J McMahon; Susanne Wilde; Barbara Mosetter; Dolores J Schendel; Carolyn M Laurencot; Steven A Rosenberg
Journal:  J Immunother       Date:  2013-02       Impact factor: 4.456

6.  A p16INK4a-insensitive CDK4 mutant targeted by cytolytic T lymphocytes in a human melanoma.

Authors:  T Wölfel; M Hauer; J Schneider; M Serrano; C Wölfel; E Klehmann-Hieb; E De Plaen; T Hankeln; K H Meyer zum Büschenfelde; D Beach
Journal:  Science       Date:  1995-09-01       Impact factor: 47.728

7.  A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection.

Authors:  Erika Assarsson; John Sidney; Carla Oseroff; Valerie Pasquetto; Huynh-Hoa Bui; Nicole Frahm; Christian Brander; Bjoern Peters; Howard Grey; Alessandro Sette
Journal:  J Immunol       Date:  2007-06-15       Impact factor: 5.422

Review 8.  How Do CD4(+) T Cells Detect and Eliminate Tumor Cells That Either Lack or Express MHC Class II Molecules?

Authors:  Ole Audun Werner Haabeth; Anders Aune Tveita; Marte Fauskanger; Fredrik Schjesvold; Kristina Berg Lorvik; Peter O Hofgaard; Hilde Omholt; Ludvig A Munthe; Zlatko Dembic; Alexandre Corthay; Bjarne Bogen
Journal:  Front Immunol       Date:  2014-04-15       Impact factor: 7.561

9.  Exomics and immunogenics: Bridging mutational load and immune checkpoints efficacy.

Authors:  Stéphane Champiat; Charles Ferté; Sophie Lebel-Binay; Alexander Eggermont; Jean Charles Soria
Journal:  Oncoimmunology       Date:  2014-01-16       Impact factor: 8.110

10.  Efficient identification of mutated cancer antigens recognized by T cells associated with durable tumor regressions.

Authors:  Yong-Chen Lu; Xin Yao; Jessica S Crystal; Yong F Li; Mona El-Gamil; Colin Gross; Lindy Davis; Mark E Dudley; James C Yang; Yardena Samuels; Steven A Rosenberg; Paul F Robbins
Journal:  Clin Cancer Res       Date:  2014-07-01       Impact factor: 12.531

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  20 in total

Review 1.  Cardiovascular Complications Associated With Novel Cancer Immunotherapies.

Authors:  Varun Jain; Jaspreet Bahia; Mahsa Mohebtash; Ana Barac
Journal:  Curr Treat Options Cardiovasc Med       Date:  2017-05

2.  Genome variation across cancers scales with tissue stiffness - an invasion-mutation mechanism and implications for immune cell infiltration.

Authors:  Charlotte R Pfeifer; Cory M Alvey; Jerome Irianto; Dennis E Discher
Journal:  Curr Opin Syst Biol       Date:  2017-04-27

Review 3.  Drugging the 'undruggable' cancer targets.

Authors:  Chi V Dang; E Premkumar Reddy; Kevan M Shokat; Laura Soucek
Journal:  Nat Rev Cancer       Date:  2017-06-23       Impact factor: 60.716

Review 4.  Neoantigen-based cancer immunotherapy.

Authors:  Sara Bobisse; Periklis G Foukas; George Coukos; Alexandre Harari
Journal:  Ann Transl Med       Date:  2016-07

5.  Precancer Atlas to Drive Precision Prevention Trials.

Authors:  Avrum Spira; Matthew B Yurgelun; Ludmil Alexandrov; Anjana Rao; Rafael Bejar; Kornelia Polyak; Marios Giannakis; Ali Shilatifard; Olivera J Finn; Madhav Dhodapkar; Neil E Kay; Esteban Braggio; Eduardo Vilar; Sarah A Mazzilli; Timothy R Rebbeck; Judy E Garber; Victor E Velculescu; Mary L Disis; Douglas C Wallace; Scott M Lippman
Journal:  Cancer Res       Date:  2017-04-01       Impact factor: 13.312

Review 6.  Reconciling evidence-based medicine and precision medicine in the era of big data: challenges and opportunities.

Authors:  Jacques S Beckmann; Daniel Lew
Journal:  Genome Med       Date:  2016-12-19       Impact factor: 11.117

Review 7.  Nature of tumour rejection antigens in ovarian cancer.

Authors:  Muzamil Y Want; Amit A Lugade; Sebastiano Battaglia; Kunle Odunsi
Journal:  Immunology       Date:  2018-06-13       Impact factor: 7.215

8.  Low Mutation Burden in Ovarian Cancer May Limit the Utility of Neoantigen-Targeted Vaccines.

Authors:  Spencer D Martin; Scott D Brown; Darin A Wick; Julie S Nielsen; David R Kroeger; Kwame Twumasi-Boateng; Robert A Holt; Brad H Nelson
Journal:  PLoS One       Date:  2016-05-18       Impact factor: 3.240

Review 9.  Squamous cell carcinomas of the lung and of the head and neck: new insights on molecular characterization.

Authors:  Valentina Polo; Giulia Pasello; Stefano Frega; Adolfo Favaretto; Haralabos Koussis; Pierfranco Conte; Laura Bonanno
Journal:  Oncotarget       Date:  2016-05-03

10.  Tumor Infiltrating Lymphocytes Affect the Outcome of Patients with Operable Triple-Negative Breast Cancer in Combination with Mutated Amino Acid Classes.

Authors:  Vassiliki Kotoula; Sotiris Lakis; Ioannis S Vlachos; Eleni Giannoulatou; Flora Zagouri; Zoi Alexopoulou; Helen Gogas; Dimitrios Pectasides; Gerasimos Aravantinos; Ioannis Efstratiou; George Pentheroudakis; Kyriaki Papadopoulou; Kyriakos Chatzopoulos; Pavlos Papakostas; Maria Sotiropoulou; Irene Nicolaou; Evangelia Razis; Amanda Psyrri; Paris Kosmidis; Christos Papadimitriou; George Fountzilas
Journal:  PLoS One       Date:  2016-09-29       Impact factor: 3.240

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