Literature DB >> 29082336

Genome variation across cancers scales with tissue stiffness - an invasion-mutation mechanism and implications for immune cell infiltration.

Charlotte R Pfeifer1,2,3, Cory M Alvey1,2,4, Jerome Irianto1,2, Dennis E Discher1,2,3,4.   

Abstract

Many different types of soft and solid tumors have now been sequenced, and meta-analyses suggest that genomic variation across tumors scales with the stiffness of the tumors' tissues of origin. The opinion expressed here is based on a review of current genomics data, and it considers multiple 'mechanogenomics' mechanisms to potentially explain this scaling of mutation rate with tissue stiffness. Since stiff solid tissues have higher density of fibrous collagen matrix, which should decrease tissue porosity, cancer cell proliferation could be affected and so could invasion into stiff tissues as the nucleus is squeezed sufficiently to enhance DNA damage. Diversification of a cancer genome after constricted migration is now clear. Understanding genome changes that give rise to neo-antigens is important to selection as well as to the development of immunotherapies, and we discuss engineered monocytes/macrophages as particularly relevant to understanding infiltration into solid tumors.

Entities:  

Year:  2017        PMID: 29082336      PMCID: PMC5654613          DOI: 10.1016/j.coisb.2017.04.005

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  98 in total

Review 1.  Human cell senescence as a DNA damage response.

Authors:  T von Zglinicki; G Saretzki; J Ladhoff; F d'Adda di Fagagna; S P Jackson
Journal:  Mech Ageing Dev       Date:  2005-01       Impact factor: 5.432

2.  BRAF inhibitor activity in V600R metastatic melanoma--response.

Authors:  Oliver Klein; Arthur Clements; Alexander M Menzies; Sandra O'Toole; Richard F Kefford; Georgina V Long
Journal:  Eur J Cancer       Date:  2013-03-13       Impact factor: 9.162

3.  Neoantigen Load, Antigen Presentation Machinery, and Immune Signatures Determine Prognosis in Clear Cell Renal Cell Carcinoma.

Authors:  Hirokazu Matsushita; Yusuke Sato; Takahiro Karasaki; Tohru Nakagawa; Haruki Kume; Seishi Ogawa; Yukio Homma; Kazuhiro Kakimi
Journal:  Cancer Immunol Res       Date:  2016-03-15       Impact factor: 11.151

Review 4.  CD19-CAR trials.

Authors:  Carlos A Ramos; Barbara Savoldo; Gianpietro Dotti
Journal:  Cancer J       Date:  2014 Mar-Apr       Impact factor: 3.360

5.  SnapShot: Mechanosensing Matrix.

Authors:  Jerome Irianto; Charlotte R Pfeifer; Yuntao Xia; Dennis E Discher
Journal:  Cell       Date:  2016-06-16       Impact factor: 41.582

6.  A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection.

Authors:  Erika Assarsson; John Sidney; Carla Oseroff; Valerie Pasquetto; Huynh-Hoa Bui; Nicole Frahm; Christian Brander; Bjoern Peters; Howard Grey; Alessandro Sette
Journal:  J Immunol       Date:  2007-06-15       Impact factor: 5.422

7.  Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.

Authors:  Iñigo Martincorena; Amit Roshan; Moritz Gerstung; Peter Ellis; Peter Van Loo; Stuart McLaren; David C Wedge; Anthony Fullam; Ludmil B Alexandrov; Jose M Tubio; Lucy Stebbings; Andrew Menzies; Sara Widaa; Michael R Stratton; Philip H Jones; Peter J Campbell
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

8.  Assessment of elasticity of colorectal cancer tissue, clinical utility, pathological and phenotypical relevance.

Authors:  Shingo Kawano; Motohiro Kojima; Yoichi Higuchi; Motokazu Sugimoto; Koji Ikeda; Naoki Sakuyama; Shinichiro Takahashi; Ryuichi Hayashi; Atsushi Ochiai; Norio Saito
Journal:  Cancer Sci       Date:  2015-08-20       Impact factor: 6.716

9.  High-resolution mechanical imaging of glioblastoma by multifrequency magnetic resonance elastography.

Authors:  Kaspar-Josche Streitberger; Martin Reiss-Zimmermann; Florian Baptist Freimann; Simon Bayerl; Jing Guo; Felix Arlt; Jens Wuerfel; Jürgen Braun; Karl-Titus Hoffmann; Ingolf Sack
Journal:  PLoS One       Date:  2014-10-22       Impact factor: 3.240

10.  Mutational landscape and significance across 12 major cancer types.

Authors:  Cyriac Kandoth; Michael D McLellan; Fabio Vandin; Kai Ye; Beifang Niu; Charles Lu; Mingchao Xie; Qunyuan Zhang; Joshua F McMichael; Matthew A Wyczalkowski; Mark D M Leiserson; Christopher A Miller; John S Welch; Matthew J Walter; Michael C Wendl; Timothy J Ley; Richard K Wilson; Benjamin J Raphael; Li Ding
Journal:  Nature       Date:  2013-10-17       Impact factor: 49.962

View more
  20 in total

Review 1.  Emerging Biomimetic Materials for Studying Tumor and Immune Cell Behavior.

Authors:  Logan A Northcutt; Alejandra Suarez-Arnedo; Marjan Rafat
Journal:  Ann Biomed Eng       Date:  2019-10-15       Impact factor: 3.934

2.  Nuclear mechanosensing.

Authors:  Yuntao Xia; Charlotte R Pfeifer; Sangkyun Cho; Dennis E Discher; Jerome Irianto
Journal:  Emerg Top Life Sci       Date:  2018-12-21

3.  Mechanoregulation of Metastasis beyond the Matrix.

Authors:  Ekrem Emrah Er; Maria Tello-Lafoz; Morgan Huse
Journal:  Cancer Res       Date:  2022-10-04       Impact factor: 13.312

4.  Automatic Multi-functional Integration Program (AMFIP) towards all-optical mechano-electrophysiology interrogation.

Authors:  Qin Luo; Justin Zhang; Miao Huang; Gaoming Lin; Mai Tanaka; Sharon Lepler; Juan Guan; Dietmar Siemann; Xin Tang
Journal:  PLoS One       Date:  2022-07-28       Impact factor: 3.752

Review 5.  Can't handle the stress? Mechanobiology and disease.

Authors:  Noam Zuela-Sopilniak; Jan Lammerding
Journal:  Trends Mol Med       Date:  2022-06-15       Impact factor: 15.272

6.  Nuclear lamin isoforms differentially contribute to LINC complex-dependent nucleocytoskeletal coupling and whole-cell mechanics.

Authors:  Amir Vahabikashi; Suganya Sivagurunathan; Fiona Ann Sadsad Nicdao; Yu Long Han; Chan Young Park; Mark Kittisopikul; Xianrong Wong; Joseph R Tran; Gregg G Gundersen; Karen L Reddy; G W Gant Luxton; Ming Guo; Jeffrey J Fredberg; Yixian Zheng; Stephen A Adam; Robert D Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-19       Impact factor: 12.779

7.  Lipid droplets disrupt mechanosensing in human hepatocytes.

Authors:  LiKang Chin; Neil D Theise; Abigail E Loneker; Paul A Janmey; Rebecca G Wells
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2020-05-28       Impact factor: 4.052

Review 8.  Beyond Tissue Stiffness and Bioadhesivity: Advanced Biomaterials to Model Tumor Microenvironments and Drug Resistance.

Authors:  Ankur Singh; Ilana Brito; Jan Lammerding
Journal:  Trends Cancer       Date:  2018-03-10

9.  Ongoing repair of migration-coupled DNA damage allows planarian adult stem cells to reach wound sites.

Authors:  Sounak Sahu; Divya Sridhar; Prasad Abnave; Noboyoshi Kosaka; Anish Dattani; James M Thompson; Mark A Hill; Aziz Aboobaker
Journal:  Elife       Date:  2021-04-23       Impact factor: 8.713

10.  Nuclear Stiffness Decreases with Disruption of the Extracellular Matrix in Living Tissues.

Authors:  Kaitlin P McCreery; Xin Xu; Adrienne K Scott; Apresio K Fajrial; Sarah Calve; Xiaoyun Ding; Corey P Neu
Journal:  Small       Date:  2021-01-20       Impact factor: 13.281

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.