Literature DB >> 26366811

Regulatory RNAs and control of epigenetic mechanisms: expectations for cognition and cognitive dysfunction.

Anderson A Butler1, William M Webb1, Farah D Lubin1.   

Abstract

The diverse functions of noncoding RNAs (ncRNAs) can influence virtually every aspect of the transcriptional process including epigenetic regulation of genes. In the CNS, regulatory RNA networks and epigenetic mechanisms have broad relevance to gene transcription changes involved in long-term memory formation and cognition. Thus, it is becoming increasingly clear that multiple classes of ncRNAs impact neuronal development, neuroplasticity, and cognition. Currently, a large gap exists in our knowledge of how ncRNAs facilitate epigenetic processes, and how this phenomenon affects cognitive function. In this review, we discuss recent findings highlighting a provocative role for ncRNAs including lncRNAs and piRNAs in the control of epigenetic mechanisms involved in cognitive function. Furthermore, we discuss the putative roles for these ncRNAs in cognitive disorders such as schizophrenia and Alzheimer's disease.

Entities:  

Keywords:  chromatin; epigenetics; long noncoding RNA; neuroplasticity; neuroscience; short noncoding RNA

Mesh:

Substances:

Year:  2015        PMID: 26366811      PMCID: PMC5514977          DOI: 10.2217/epi.15.79

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  176 in total

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Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

Review 2.  Epigenetic reprogramming in mammals.

Authors:  Hugh D Morgan; Fátima Santos; Kelly Green; Wendy Dean; Wolf Reik
Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

Review 3.  A census of human RNA-binding proteins.

Authors:  Stefanie Gerstberger; Markus Hafner; Thomas Tuschl
Journal:  Nat Rev Genet       Date:  2014-11-04       Impact factor: 53.242

Review 4.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

5.  Growth factors stimulate expression of neuronal and glial miR-132.

Authors:  Tadahiro Numakawa; Noriko Yamamoto; Shuichi Chiba; Misty Richards; Yoshiko Ooshima; Soichiro Kishi; Kazuo Hashido; Naoki Adachi; Hiroshi Kunugi
Journal:  Neurosci Lett       Date:  2011-10-19       Impact factor: 3.046

Review 6.  MicroRNAs and cardiovascular diseases.

Authors:  Koh Ono; Yasuhide Kuwabara; Jiahuai Han
Journal:  FEBS J       Date:  2011-03-30       Impact factor: 5.542

7.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

8.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

9.  RNAi components are required for nuclear clustering of Polycomb group response elements.

Authors:  Charlotte Grimaud; Frédéric Bantignies; Manika Pal-Bhadra; Pallavi Ghana; Utpal Bhadra; Giacomo Cavalli
Journal:  Cell       Date:  2006-03-10       Impact factor: 41.582

Review 10.  Finding the target sites of RNA-binding proteins.

Authors:  Xiao Li; Hilal Kazan; Howard D Lipshitz; Quaid D Morris
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-11-11       Impact factor: 9.957

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  17 in total

1.  LncRNA-LINC00152 down-regulated by miR-376c-3p restricts viability and promotes apoptosis of colorectal cancer cells.

Authors:  Yu-Hao Zhang; Jun Fu; Zhi-Jin Zhang; Cui-Cui Ge; Yi Yi
Journal:  Am J Transl Res       Date:  2016-12-15       Impact factor: 4.060

Review 2.  A putative role for lncRNAs in epigenetic regulation of memory.

Authors:  Ashleigh B Irwin; Rudhab Bahabry; Farah D Lubin
Journal:  Neurochem Int       Date:  2021-09-14       Impact factor: 3.921

3.  LncRNA-MEG3 Regulates the Inflammatory Responses and Apoptosis in Porcine Alveolar Macrophages Infected with Haemophilus parasuis Through Modulating the miR-210/TLR4 Axis.

Authors:  Rong H Yin; Zhong B Guo; Yuan Y Zhou; Chao Wang; Rong L Yin; Wen L Bai
Journal:  Curr Microbiol       Date:  2021-06-30       Impact factor: 2.188

4.  Computational Analysis Predicts Hundreds of Coding lncRNAs in Zebrafish.

Authors:  Shital Kumar Mishra; Han Wang
Journal:  Biology (Basel)       Date:  2021-04-26

5.  Long noncoding RNA RP4 functions as a competing endogenous RNA through miR-7-5p sponge activity in colorectal cancer.

Authors:  Mu-Lin Liu; Qiao Zhang; Xiao Yuan; Long Jin; Li-Li Wang; Tao-Tao Fang; Wen-Bin Wang
Journal:  World J Gastroenterol       Date:  2018-03-07       Impact factor: 5.742

6.  Novel brain expressed RNA identified at the MIR137 schizophrenia-associated locus.

Authors:  Olympia Gianfrancesco; Alix Warburton; David A Collier; Vivien J Bubb; John P Quinn
Journal:  Schizophr Res       Date:  2016-11-29       Impact factor: 4.939

7.  Lnc-HSD17B11-1:1 Functions as a Competing Endogenous RNA to Promote Colorectal Cancer Progression by Sponging miR-338-3p to Upregulate MACC1.

Authors:  Wei Zhang; Bo Wang; Quan Wang; Zhen Zhang; Zhanlong Shen; Yingjiang Ye; Kewei Jiang; Shan Wang
Journal:  Front Genet       Date:  2020-06-12       Impact factor: 4.599

8.  The long noncoding RNA CASC2 functions as a competing endogenous RNA by sponging miR-18a in colorectal cancer.

Authors:  Guanli Huang; Xiaoli Wu; Shi Li; Xiaoqun Xu; Hua Zhu; Xiangjian Chen
Journal:  Sci Rep       Date:  2016-05-20       Impact factor: 4.379

Review 9.  Structure Prediction: New Insights into Decrypting Long Noncoding RNAs.

Authors:  Kun Yan; Yasir Arfat; Dijie Li; Fan Zhao; Zhihao Chen; Chong Yin; Yulong Sun; Lifang Hu; Tuanmin Yang; Airong Qian
Journal:  Int J Mol Sci       Date:  2016-01-21       Impact factor: 5.923

Review 10.  Evolutionary development of embryonic cerebrospinal fluid composition and regulation: an open research field with implications for brain development and function.

Authors:  David Bueno; Jordi Garcia-Fernàndez
Journal:  Fluids Barriers CNS       Date:  2016-03-15
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