Literature DB >> 26365816

There are no caterpillars in a wicked forest.

James H Degnan1, John A Rhodes2.   

Abstract

Species trees represent the historical divergences of populations or species, while gene trees trace the ancestry of individual gene copies sampled within those populations. In cases involving rapid speciation, gene trees with topologies that differ from that of the species tree can be most probable under the standard multispecies coalescent model, making species tree inference more difficult. Such anomalous gene trees are not well understood except for some small cases. In this work, we establish one constraint that applies to trees of any size: gene trees with "caterpillar" topologies cannot be anomalous. The proof of this involves a new combinatorial object, called a population history, which keeps track of the number of coalescent events in each ancestral population.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Anomalous gene tree; Coalescent history; Gene tree; Multispecies coalescent; Phylogeny; Species tree

Mesh:

Year:  2015        PMID: 26365816     DOI: 10.1016/j.tpb.2015.08.007

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  6 in total

1.  Inferring rooted species trees from unrooted gene trees using approximate Bayesian computation.

Authors:  Ayed R A Alanzi; James H Degnan
Journal:  Mol Phylogenet Evol       Date:  2017-08-02       Impact factor: 4.286

2.  Probabilities of Unranked and Ranked Anomaly Zones under Birth-Death Models.

Authors:  Anastasiia Kim; Noah A Rosenberg; James H Degnan
Journal:  Mol Biol Evol       Date:  2020-05-01       Impact factor: 16.240

3.  Enumeration of compact coalescent histories for matching gene trees and species trees.

Authors:  Filippo Disanto; Noah A Rosenberg
Journal:  J Math Biol       Date:  2018-08-16       Impact factor: 2.259

4.  Enumeration of coalescent histories for caterpillar species trees and p-pseudocaterpillar gene trees.

Authors:  Egor Alimpiev; Noah A Rosenberg
Journal:  Adv Appl Math       Date:  2021-08-23       Impact factor: 1.271

5.  Roadblocked monotonic paths and the enumeration of coalescent histories for non-matching caterpillar gene trees and species trees.

Authors:  Zoe M Himwich; Noah A Rosenberg
Journal:  Adv Appl Math       Date:  2019-10-31       Impact factor: 0.848

6.  An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees.

Authors:  Lawrence H Uricchio; Tandy Warnow; Noah A Rosenberg
Journal:  BMC Bioinformatics       Date:  2016-11-11       Impact factor: 3.169

  6 in total

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