Literature DB >> 26365802

Molecular Basis for Cooperative Binding of Anionic Phospholipids to the PH Domain of the Arf GAP ASAP1.

Xiaoying Jian1, Wai-Kwan Tang2, Peng Zhai1, Neeladri Sekhar Roy1, Ruibai Luo1, James M Gruschus3, Marielle E Yohe4, Pei-Wen Chen1, Yifei Li5, R Andrew Byrd5, Di Xia6, Paul A Randazzo7.   

Abstract

We have defined the molecular basis for association of the PH domain of the Arf GAP ASAP1 with phospholipid bilayers. Structures of the unliganded and dibutyryl PtdIns(4,5)P2-bound PH domain were solved. PtdIns(4,5)P2 made contact with both a canonical site (C site) and an atypical site (A site). We hypothesized cooperative binding of PtdIns(4,5)P2 to the C site and a nonspecific anionic phospholipid to the A site. PtdIns(4,5)P2 dependence of binding to large unilamellar vesicles and GAP activity was sigmoidal, consistent with cooperative sites. In contrast, PtdIns(4,5)P2 binding to the PH domain of PLC δ1 was hyperbolic. Mutation of amino acids in either the C or A site resulted in decreased PtdIns(4,5)P2-dependent binding to vesicles and decreased GAP activity. The results support the idea of cooperative phospholipid binding to the C and A sites of the PH domain of ASAP1. We propose that the mechanism underlies rapid switching between active and inactive ASAP1.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26365802      PMCID: PMC4788500          DOI: 10.1016/j.str.2015.08.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  59 in total

1.  Assay and purification of phosphoinositide-dependent ADP-ribosylation factor (ARF) GTPase activating proteins.

Authors:  P A Randazzo; K Miura; T R Jackson
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  An approach to multi-copy search in molecular replacement.

Authors:  A Vagin; A Teplyakov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-12

3.  A crystallographic view of interactions between Dbs and Cdc42: PH domain-assisted guanine nucleotide exchange.

Authors:  Kent L Rossman; David K Worthylake; Jason T Snyder; David P Siderovski; Sharon L Campbell; John Sondek
Journal:  EMBO J       Date:  2002-03-15       Impact factor: 11.598

Review 4.  Proteomics and models for enzyme cooperativity.

Authors:  Daniel E Koshland; Kambiz Hamadani
Journal:  J Biol Chem       Date:  2002-08-19       Impact factor: 5.157

Review 5.  AKT/PKB and other D3 phosphoinositide-regulated kinases: kinase activation by phosphoinositide-dependent phosphorylation.

Authors:  T O Chan; S E Rittenhouse; P N Tsichlis
Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

6.  Phosphoinositide-dependent activation of the ADP-ribosylation factor GTPase-activating protein ASAP1. Evidence for the pleckstrin homology domain functioning as an allosteric site.

Authors:  J L Kam; K Miura; T R Jackson; J Gruschus; P Roller; S Stauffer; J Clark; R Aneja; P A Randazzo
Journal:  J Biol Chem       Date:  2000-03-31       Impact factor: 5.157

Review 7.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

Review 8.  Specificity in pleckstrin homology (PH) domain membrane targeting: a role for a phosphoinositide-protein co-operative mechanism.

Authors:  T Maffucci; M Falasca
Journal:  FEBS Lett       Date:  2001-10-12       Impact factor: 4.124

9.  High-resolution structure of the pleckstrin homology domain of protein kinase b/akt bound to phosphatidylinositol (3,4,5)-trisphosphate.

Authors:  Christine C Thomas; Maria Deak; Dario R Alessi; Daan M F van Aalten
Journal:  Curr Biol       Date:  2002-07-23       Impact factor: 10.834

10.  The association of ASAP1, an ADP ribosylation factor-GTPase activating protein, with focal adhesion kinase contributes to the process of focal adhesion assembly.

Authors:  Yunhao Liu; Joost C Loijens; Karen H Martin; Andrei V Karginov; J Thomas Parsons
Journal:  Mol Biol Cell       Date:  2002-06       Impact factor: 4.138

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  31 in total

Review 1.  Arf GAPs and molecular motors.

Authors:  Ruibai Luo; Christine E Reed; Jeffrey A Sload; Linda Wordeman; Paul A Randazzo; Pei-Wen Chen
Journal:  Small GTPases       Date:  2017-04-21

Review 2.  Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins.

Authors:  Joshua G Pemberton; Tamas Balla
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

3.  Functional Expression and Characterization of Human Myristoylated-Arf1 in Nanodisc Membrane Mimetics.

Authors:  Yifei Li; Olivier Soubias; Jess Li; Shangjin Sun; Paul A Randazzo; R Andrew Byrd
Journal:  Biochemistry       Date:  2019-02-20       Impact factor: 3.162

Review 4.  Allosteric properties of PH domains in Arf regulatory proteins.

Authors:  Neeladri Sekhar Roy; Marielle E Yohe; Paul A Randazzo; James M Gruschus
Journal:  Cell Logist       Date:  2016-04-26

5.  Computer simulations of protein-membrane systems.

Authors:  Jennifer Loschwitz; Olujide O Olubiyi; Jochen S Hub; Birgit Strodel; Chetan S Poojari
Journal:  Prog Mol Biol Transl Sci       Date:  2020-02-26       Impact factor: 3.622

6.  The BAR domain of the Arf GTPase-activating protein ASAP1 directly binds actin filaments.

Authors:  Pei-Wen Chen; Neil Billington; Ben Y Maron; Jeffrey A Sload; Krishna Chinthalapudi; Sarah M Heissler
Journal:  J Biol Chem       Date:  2020-05-22       Impact factor: 5.157

7.  Interaction of the N terminus of ADP-ribosylation factor with the PH domain of the GTPase-activating protein ASAP1 requires phosphatidylinositol 4,5-bisphosphate.

Authors:  Neeladri Sekhar Roy; Xiaoying Jian; Olivier Soubias; Peng Zhai; Jessica R Hall; Jessica N Dagher; Nathan P Coussens; Lisa M Jenkins; Ruibai Luo; Itoro O Akpan; Matthew D Hall; R Andrew Byrd; Marielle E Yohe; Paul A Randazzo
Journal:  J Biol Chem       Date:  2019-10-06       Impact factor: 5.157

8.  Optimization of sortase A ligation for flexible engineering of complex protein systems.

Authors:  Jess Li; Yue Zhang; Olivier Soubias; Domarin Khago; Fa-An Chao; Yifei Li; Katherine Shaw; R Andrew Byrd
Journal:  J Biol Chem       Date:  2020-01-23       Impact factor: 5.157

9.  Association of Peripheral Membrane Proteins with Membranes: Free Energy of Binding of GRP1 PH Domain with Phosphatidylinositol Phosphate-Containing Model Bilayers.

Authors:  Fiona B Naughton; Antreas C Kalli; Mark S P Sansom
Journal:  J Phys Chem Lett       Date:  2016-03-17       Impact factor: 6.475

Review 10.  Invited review: Small GTPases and their GAPs.

Authors:  Ashwini K Mishra; David G Lambright
Journal:  Biopolymers       Date:  2016-08       Impact factor: 2.505

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