Literature DB >> 26364057

Gene mutations in gastric cancer: a review of recent next-generation sequencing studies.

Y Lin1, Z Wu1, W Guo1,2, J Li3.   

Abstract

Gastric cancer (GC) is one of the most common malignancies worldwide. Although some driver genes have been identified in GC, the molecular compositions of GC have not been fully understood. The development of next-generation sequencing (NGS) provides a high-throughput and systematic method to identify all genetic alterations in the cancer genome, especially in the field of mutation detection. NGS studies in GC have discovered some novel driver mutations. In this review, we focused on novel gene mutations discovered by NGS studies, along with some well-known driver genes in GC. We organized mutated genes from the perspective of related biological pathways. Mutations in genes relating to genome integrity (TP53, BRCA2), chromatin remodeling (ARID1A), cell adhesion (CDH1, FAT4, CTNNA1), cytoskeleton and cell motility (RHOA), Wnt pathway (CTNNB1, APC, RNF43), and RTK pathway (RTKs, RAS family, MAPK pathway, PIK pathway) are discussed. Efforts to establish a molecular classification based on NGS data which is valuable for future targeted therapy for GC are introduced. Comprehensive dissection of the molecular profile of GC cannot only unveil the molecular basis for GC but also identify genes of clinical utility, especially potential and specific therapeutic targets for GC.

Entities:  

Keywords:  Gastric cancer; Gene mutation; Next-generation sequencing

Mesh:

Substances:

Year:  2015        PMID: 26364057     DOI: 10.1007/s13277-015-4002-1

Source DB:  PubMed          Journal:  Tumour Biol        ISSN: 1010-4283


  76 in total

1.  Genetic and structural variation in the gastric cancer kinome revealed through targeted deep sequencing.

Authors:  Zhi Jiang Zang; Choon Kiat Ong; Ioana Cutcutache; Willie Yu; Shen Li Zhang; Dachuan Huang; Lian Dee Ler; Karl Dykema; Anna Gan; Jiong Tao; Siyu Lim; Yujing Liu; P Andrew Futreal; Heike Grabsch; Kyle A Furge; Liang Kee Goh; Steve Rozen; Bin Tean Teh; Patrick Tan
Journal:  Cancer Res       Date:  2010-11-19       Impact factor: 12.701

Review 2.  Wnt/Planar cell polarity signaling: a new paradigm for cancer therapy.

Authors:  Yingqun Wang
Journal:  Mol Cancer Ther       Date:  2009-08-11       Impact factor: 6.261

3.  Hereditary Diffuse Gastric Cancer Syndrome: CDH1 Mutations and Beyond.

Authors:  Samantha Hansford; Pardeep Kaurah; Hector Li-Chang; Michelle Woo; Janine Senz; Hugo Pinheiro; Kasmintan A Schrader; David F Schaeffer; Karey Shumansky; George Zogopoulos; Teresa Almeida Santos; Isabel Claro; Joana Carvalho; Cydney Nielsen; Sarah Padilla; Amy Lum; Aline Talhouk; Katie Baker-Lange; Sue Richardson; Ivy Lewis; Noralane M Lindor; Erin Pennell; Andree MacMillan; Bridget Fernandez; Gisella Keller; Henry Lynch; Sohrab P Shah; Parry Guilford; Steven Gallinger; Giovanni Corso; Franco Roviello; Carlos Caldas; Carla Oliveira; Paul D P Pharoah; David G Huntsman
Journal:  JAMA Oncol       Date:  2015-04       Impact factor: 31.777

4.  AMPKα modulation in cancer progression: multilayer integrative analysis of the whole transcriptome in Asian gastric cancer.

Authors:  Yon Hui Kim; Han Liang; Xiuping Liu; Ju-Seog Lee; Jae Yong Cho; Jae-Ho Cheong; Hoguen Kim; Min Li; Thomas J Downey; Matthew D Dyer; Yongming Sun; Jingtao Sun; Ellen M Beasley; Hyun Cheol Chung; Sung Hoon Noh; John N Weinstein; Chang-Gong Liu; Garth Powis
Journal:  Cancer Res       Date:  2012-03-20       Impact factor: 12.701

5.  Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.

Authors:  Siân Jones; Tian-Li Wang; Ie-Ming Shih; Tsui-Lien Mao; Kentaro Nakayama; Richard Roden; Ruth Glas; Dennis Slamon; Luis A Diaz; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu; Nickolas Papadopoulos
Journal:  Science       Date:  2010-09-08       Impact factor: 47.728

Review 6.  Cancer susceptibility and the functions of BRCA1 and BRCA2.

Authors:  Ashok R Venkitaraman
Journal:  Cell       Date:  2002-01-25       Impact factor: 41.582

Review 7.  Caught up in a Wnt storm: Wnt signaling in cancer.

Authors:  Rachel H Giles; Johan H van Es; Hans Clevers
Journal:  Biochim Biophys Acta       Date:  2003-06-05

8.  Somatic mutations in the chromatin remodeling gene ARID1A occur in several tumor types.

Authors:  Siân Jones; Meng Li; D Williams Parsons; Xiaosong Zhang; Jelle Wesseling; Petra Kristel; Marjanka K Schmidt; Sanford Markowitz; Hai Yan; Darell Bigner; Ralph H Hruban; James R Eshleman; Christine A Iacobuzio-Donahue; Michael Goggins; Anirban Maitra; Sami N Malek; Steve Powell; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu; Nickolas Papadopoulos
Journal:  Hum Mutat       Date:  2011-11-23       Impact factor: 4.878

9.  Novel recurrently mutated genes and a prognostic mutation signature in colorectal cancer.

Authors:  Jun Yu; William K K Wu; Xiangchun Li; Jun He; Xiao-Xing Li; Simon S M Ng; Chang Yu; Zhibo Gao; Jie Yang; Miao Li; Qiaoxiu Wang; Qiaoyi Liang; Yi Pan; Joanna H Tong; Ka F To; Nathalie Wong; Ning Zhang; Jie Chen; Youyong Lu; Paul B S Lai; Francis K L Chan; Yingrui Li; Hsiang-Fu Kung; Huanming Yang; Jun Wang; Joseph J Y Sung
Journal:  Gut       Date:  2014-06-20       Impact factor: 23.059

10.  Genomic profile analysis of diffuse-type gastric cancers.

Authors:  Yeon-Su Lee; Yun Sung Cho; Geon Kook Lee; Sunghoon Lee; Young-Woo Kim; Sungwoong Jho; Hak-Min Kim; Seung-Hyun Hong; Jung-Ah Hwang; Sook-young Kim; Dongwan Hong; Il Ju Choi; Byung Chul Kim; Byoung-Chul Kim; Chul Hong Kim; Hansol Choi; Youngju Kim; Kyung Wook Kim; Gu Kong; Hyung Lae Kim; Jong Bhak; Seung Hoon Lee; Jin Soo Lee
Journal:  Genome Biol       Date:  2014-04-01       Impact factor: 13.583

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  23 in total

Review 1.  How to stomach an epigenetic insult: the gastric cancer epigenome.

Authors:  Nisha Padmanabhan; Toshikazu Ushijima; Patrick Tan
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2017-05-17       Impact factor: 46.802

2.  Ubiquitin-Conjugating Enzyme E2T is an Independent Prognostic Factor and Promotes Gastric Cancer Progression.

Authors:  Hao Yu; Pei Xiang; Qi Pan; Yijiao Huang; Nanlan Xie; Weimin Zhu
Journal:  Tumour Biol       Date:  2016-03-28

3.  Loss of Apc Cooperates with Activated Oncogenes to Induce Liver Tumor Formation in Mice.

Authors:  Yi Zhang; Binyong Liang; Xinhua Song; Haichuan Wang; Matthias Evert; Yi Zhou; Diego F Calvisi; Liling Tang; Xin Chen
Journal:  Am J Pathol       Date:  2021-02-03       Impact factor: 4.307

4.  Identification and Validation of SNP-Containing Genes With Prognostic Value in Gastric Cancer via Integrated Bioinformatics Analysis.

Authors:  Hui Li; Jing Guo; Guang Cheng; Yucheng Wei; Shihai Liu; Yaoyue Qi; Gongjun Wang; Ruoxi Xiao; Weiwei Qi; Wensheng Qiu
Journal:  Front Oncol       Date:  2021-04-27       Impact factor: 6.244

Review 5.  Emerging molecular classifications and therapeutic implications for gastric cancer.

Authors:  Tao Chen; Xiao-Yue Xu; Ping-Hong Zhou
Journal:  Chin J Cancer       Date:  2016-05-27

6.  Whole-exome sequencing to identify somatic mutations in peritoneal metastatic gastric adenocarcinoma: A preliminary study.

Authors:  Hao Liu; Fengping Li; Yu Zhu; Tingting Li; Haipeng Huang; Tian Lin; Yanfeng Hu; Xiaolong Qi; Jiang Yu; Guoxin Li
Journal:  Oncotarget       Date:  2016-07-12

7.  EPSIN 3, A Novel p53 Target, Regulates the Apoptotic Pathway and Gastric Carcinogenesis.

Authors:  Jinichi Mori; Chizu Tanikawa; Naomi Ohnishi; Yuki Funauchi; Osamu Toyoshima; Koji Ueda; Koichi Matsuda
Journal:  Neoplasia       Date:  2017-01-30       Impact factor: 5.715

8.  Protocadherin-8 promotes invasion and metastasis via laminin subunit γ2 in gastric cancer.

Authors:  Ying Lin; Xiaoxiao Ge; Xiaofei Zhang; Zheng Wu; Kaiyi Liu; Fengjuan Lin; Congqi Dai; Weijian Guo; Jin Li
Journal:  Cancer Sci       Date:  2018-02-20       Impact factor: 6.716

Review 9.  Gastric Cancer in the Era of Precision Medicine.

Authors:  Xi Liu; Stephen J Meltzer
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2017-02-20

Review 10.  History and progression of Fat cadherins in health and disease.

Authors:  Xiaofeng Zhang; Jinghua Liu; Xiao Liang; Jiang Chen; Junjie Hong; Libo Li; Qiang He; Xiujun Cai
Journal:  Onco Targets Ther       Date:  2016-12-01       Impact factor: 4.147

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