Literature DB >> 26363124

Bacterial CRISPR: accomplishments and prospects.

Jason M Peters1, Melanie R Silvis2, Dehua Zhao3, John S Hawkins4, Carol A Gross5, Lei S Qi6.   

Abstract

In this review we briefly describe the development of CRISPR tools for genome editing and control of transcription in bacteria. We focus on the Type II CRISPR/Cas9 system, provide specific examples for use of the system, and highlight the advantages and disadvantages of CRISPR versus other techniques. We suggest potential strategies for combining CRISPR tools with high-throughput approaches to elucidate gene function in bacteria.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID： 26363124      PMCID： PMC4659716          DOI： 10.1016/j.mib.2015.08.007

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  51 in total

Review 1.  The roles of CRISPR-Cas systems in adaptive immunity and beyond.

Authors:  Rodolphe Barrangou
Journal:  Curr Opin Immunol       Date:  2015-01-06       Impact factor: 7.486

2.  Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system.

Authors:  Yu Jiang; Biao Chen; Chunlan Duan; Bingbing Sun; Junjie Yang; Sheng Yang
Journal:  Appl Environ Microbiol       Date:  2015-01-30       Impact factor: 4.792

3.  Gene silencing by CRISPR interference in mycobacteria.

Authors:  Eira Choudhary; Preeti Thakur; Madhu Pareek; Nisheeth Agarwal
Journal:  Nat Commun       Date:  2015-02-25       Impact factor: 14.919

4.  One-step high-efficiency CRISPR/Cas9-mediated genome editing in Streptomyces.

Authors:  He Huang; Guosong Zheng; Weihong Jiang; Haifeng Hu; Yinhua Lu
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2015-03-03       Impact factor: 3.848

5.  Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro E Trevino; Julia Joung; Omar O Abudayyeh; Clea Barcena; Patrick D Hsu; Naomi Habib; Jonathan S Gootenberg; Hiroshi Nishimasu; Osamu Nureki; Feng Zhang
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

6.  Specific gene repression by CRISPRi system transferred through bacterial conjugation.

Authors:  Weiyue Ji; Derrick Lee; Eric Wong; Priyanka Dadlani; David Dinh; Verna Huang; Kendall Kearns; Sherry Teng; Susan Chen; John Haliburton; Graham Heimberg; Benjamin Heineike; Anusuya Ramasubramanian; Thomas Stevens; Kara J Helmke; Veronica Zepeda; Lei S Qi; Wendell A Lim
Journal:  ACS Synth Biol       Date:  2014-12-06       Impact factor: 5.110

7.  A protein-tagging system for signal amplification in gene expression and fluorescence imaging.

Authors:  Marvin E Tanenbaum; Luke A Gilbert; Lei S Qi; Jonathan S Weissman; Ronald D Vale
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582

8.  Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials.

Authors:  David Bikard; Chad W Euler; Wenyan Jiang; Philip M Nussenzweig; Gregory W Goldberg; Xavier Duportet; Vincent A Fischetti; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2014-10-05       Impact factor: 54.908

9.  CRISPR-Cas9-assisted recombineering in Lactobacillus reuteri.

Authors:  Jee-Hwan Oh; Jan-Peter van Pijkeren
Journal:  Nucleic Acids Res       Date:  2014-07-29       Impact factor: 16.971

10.  Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.

Authors:  Luke A Gilbert; Max A Horlbeck; Britt Adamson; Jacqueline E Villalta; Yuwen Chen; Evan H Whitehead; Carla Guimaraes; Barbara Panning; Hidde L Ploegh; Michael C Bassik; Lei S Qi; Martin Kampmann; Jonathan S Weissman
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582
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  24 in total

1.  The dev Operon Regulates the Timing of Sporulation during Myxococcus xanthus Development.

Authors:  Ramya Rajagopalan; Lee Kroos
Journal:  J Bacteriol       Date:  2017-04-25       Impact factor: 3.490

Review 2.  The Colorful World of Extracellular Electron Shuttles.

Authors:  Nathaniel R Glasser; Scott H Saunders; Dianne K Newman
Journal:  Annu Rev Microbiol       Date:  2017-07-21       Impact factor: 15.500

Review 3.  Molecular phenotyping of infection-associated small non-coding RNAs.

Authors:  Lars Barquist; Alexander J Westermann; Jörg Vogel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-11-05       Impact factor: 6.237

Review 4.  Bacterial CRISPR screens for gene function.

Authors:  Horia Todor; Melanie R Silvis; Hendrik Osadnik; Carol A Gross
Journal:  Curr Opin Microbiol       Date:  2020-12-04       Impact factor: 7.934

5.  A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria.

Authors:  Jason M Peters; Alexandre Colavin; Handuo Shi; Tomasz L Czarny; Matthew H Larson; Spencer Wong; John S Hawkins; Candy H S Lu; Byoung-Mo Koo; Elizabeth Marta; Anthony L Shiver; Evan H Whitehead; Jonathan S Weissman; Eric D Brown; Lei S Qi; Kerwyn Casey Huang; Carol A Gross
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

6.  Depletion of Undecaprenyl Pyrophosphate Phosphatases Disrupts Cell Envelope Biogenesis in Bacillus subtilis.

Authors:  Heng Zhao; Yingjie Sun; Jason M Peters; Carol A Gross; Ethan C Garner; John D Helmann
Journal:  J Bacteriol       Date:  2016-10-07       Impact factor: 3.490

7.  Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design.

Authors:  Shuyi Zhang; Christopher A Voigt
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

Review 8.  The next frontier of oncotherapy: accomplishing clinical translation of oncolytic bacteria through genetic engineering.

Authors:  Kaitlin M Dailey; JuliAnne E Allgood; Paige R Johnson; Mackenzie A Ostlie; Kambri C Schaner; Benjamin D Brooks; Amanda E Brooks
Journal:  Future Microbiol       Date:  2021-03-23       Impact factor: 3.165

9.  Computational pipeline for designing guide RNAs for mismatch-CRISPRi.

Authors:  Jordi van Gestel; John S Hawkins; Horia Todor; Carol A Gross
Journal:  STAR Protoc       Date:  2021-05-05

Review 10.  Diversity of CRISPR-Cas immune systems and molecular machines.

Authors:  Rodolphe Barrangou
Journal:  Genome Biol       Date:  2015-11-09       Impact factor: 13.583
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