Literature DB >> 26362109

Structural and mechanistic insights on nitrate reductases.

Catarina Coelho1, Maria João Romão1.   

Abstract

Nitrate reductases (NR) belong to the DMSO reductase family of Mo-containing enzymes and perform key roles in the metabolism of the nitrogen cycle, reducing nitrate to nitrite. Due to variable cell location, structure and function, they have been divided into periplasmic (Nap), cytoplasmic, and membrane-bound (Nar) nitrate reductases. The first crystal structure obtained for a NR was that of the monomeric NapA from Desulfovibrio desulfuricans in 1999. Since then several new crystal structures were solved providing novel insights that led to the revision of the commonly accepted reaction mechanism for periplasmic nitrate reductases. The two crystal structures available for the NarGHI protein are from the same organism (Escherichia coli) and the combination with electrochemical and spectroscopic studies also lead to the proposal of a reaction mechanism for this group of enzymes. Here we present an overview on the current advances in structural and functional aspects of bacterial nitrate reductases, focusing on the mechanistic implications drawn from the crystallographic data.
© 2015 The Protein Society.

Entities:  

Keywords:  DMSO reductase family; crystal structure; enzymatic mechanism; membrane-bound nitrate reductase; molybdenum enzymes; nitrogen cycle; periplasmic nitrate reductase

Mesh:

Substances:

Year:  2015        PMID: 26362109      PMCID: PMC4815237          DOI: 10.1002/pro.2801

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  45 in total

1.  Crystallization and preliminary X-ray analysis of the recombinant dihaem cytochrome c (NapB) from Haemophilus influenzae.

Authors:  A Brigé ; D Leys ; J J Van Beeumen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-03

2.  Structural and biochemical characterization of a quinol binding site of Escherichia coli nitrate reductase A.

Authors:  Michela G Bertero; Richard A Rothery; Nasim Boroumand; Monica Palak; Francis Blasco; Nicolas Ginet; Joel H Weiner; Natalie C J Strynadka
Journal:  J Biol Chem       Date:  2004-12-22       Impact factor: 5.157

3.  Crystal structure of DMSO reductase: redox-linked changes in molybdopterin coordination.

Authors:  H Schindelin; C Kisker; J Hilton; K V Rajagopalan; D C Rees
Journal:  Science       Date:  1996-06-14       Impact factor: 47.728

Review 4.  Molybdenum and tungsten enzymes: a crystallographic and mechanistic overview.

Authors:  Maria João Romão
Journal:  Dalton Trans       Date:  2009-03-14       Impact factor: 4.390

5.  Purification and crystallization of the respiratory complex formate dehydrogenase-N from Escherichia coli.

Authors:  Mika Jormakka; Susanna Törnroth; Jeff Abramson; Bernadette Byrne; So Iwata
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-12-21

Review 6.  Molybdenum cofactors, enzymes and pathways.

Authors:  Günter Schwarz; Ralf R Mendel; Markus W Ribbe
Journal:  Nature       Date:  2009-08-13       Impact factor: 49.962

Review 7.  Cell biology of molybdenum.

Authors:  Ralf R Mendel; Florian Bittner
Journal:  Biochim Biophys Acta       Date:  2006-05-12

8.  Crystal structure of the 100 kDa arsenite oxidase from Alcaligenes faecalis in two crystal forms at 1.64 A and 2.03 A.

Authors:  P J Ellis; T Conrads; R Hille; P Kuhn
Journal:  Structure       Date:  2001-02-07       Impact factor: 5.006

9.  Gene sequence and the 1.8 A crystal structure of the tungsten-containing formate dehydrogenase from Desulfovibrio gigas.

Authors:  Hans Raaijmakers; Sofia Macieira; João M Dias; Susana Teixeira; Sergey Bursakov; Robert Huber; José J G Moura; Isabel Moura; Maria J Romão
Journal:  Structure       Date:  2002-09       Impact factor: 5.006

Review 10.  The prokaryotic Mo/W-bisPGD enzymes family: a catalytic workhorse in bioenergetic.

Authors:  Stéphane Grimaldi; Barbara Schoepp-Cothenet; Pierre Ceccaldi; Bruno Guigliarelli; Axel Magalon
Journal:  Biochim Biophys Acta       Date:  2013-01-31
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  10 in total

1.  The O2-independent pathway of ubiquinone biosynthesis is essential for denitrification in Pseudomonas aeruginosa.

Authors:  Chau-Duy-Tam Vo; Julie Michaud; Sylvie Elsen; Bruno Faivre; Emmanuelle Bouveret; Frédéric Barras; Marc Fontecave; Fabien Pierrel; Murielle Lombard; Ludovic Pelosi
Journal:  J Biol Chem       Date:  2020-05-14       Impact factor: 5.157

2.  Nitrate modulation of Bacillus sp. biofilm components: a proposed model for sustainable bioremediation.

Authors:  Ola M Gomaa; Hussein Abd El Kareem; Nabila Selim
Journal:  Biotechnol Lett       Date:  2021-09-12       Impact factor: 2.461

3.  Biophysical and in silico characterization of NrtA: a protein-based host for aqueous nitrate and nitrite recognition.

Authors:  Ke Ji; Kiheon Baek; Weicheng Peng; Kevin A Alberto; Hedieh Torabifard; Steven O Nielsen; Sheel C Dodani
Journal:  Chem Commun (Camb)       Date:  2022-01-20       Impact factor: 6.065

4.  Robust Production, Crystallization, Structure Determination, and Analysis of [Fe-S] Proteins: Uncovering Control of Electron Shuttling and Gating in the Respiratory Metabolism of Molybdopterin Guanine Dinucleotide Enzymes.

Authors:  Chi-Lin Tsai; John A Tainer
Journal:  Methods Enzymol       Date:  2017-12-19       Impact factor: 1.600

5.  NapB in excess inhibits growth of Shewanella oneidensis by dissipating electrons of the quinol pool.

Authors:  Miao Jin; Qianyun Zhang; Yijuan Sun; Haichun Gao
Journal:  Sci Rep       Date:  2016-11-18       Impact factor: 4.379

6.  Complete Circular Genome Sequence and Temperature Independent Adaptation to Anaerobiosis of Listeria weihenstephanensis DSM 24698.

Authors:  Elena Ferrari; Mathias C Walter; Christopher Huptas; Siegfried Scherer; Stefanie Müller-Herbst
Journal:  Front Microbiol       Date:  2017-09-01       Impact factor: 5.640

7.  Nitrate Reductases Are Relocalized to the Nucleus by AtSIZ1 and Their Levels Are Negatively Regulated by COP1 and Ammonium.

Authors:  Joo Yong Kim; Bong Soo Park; Sang Woo Park; Han Yong Lee; Jong Tae Song; Hak Soo Seo
Journal:  Int J Mol Sci       Date:  2018-04-15       Impact factor: 5.923

8.  Splicing the active phases of copper/cobalt-based catalysts achieves high-rate tandem electroreduction of nitrate to ammonia.

Authors:  Wenhui He; Jian Zhang; Stefan Dieckhöfer; Swapnil Varhade; Ann Cathrin Brix; Anna Lielpetere; Sabine Seisel; João R C Junqueira; Wolfgang Schuhmann
Journal:  Nat Commun       Date:  2022-03-02       Impact factor: 17.694

9.  Genomic Insights Into A Novel, Alkalitolerant Nitrogen Fixing Bacteria, Azonexus sp. Strain ZS02.

Authors:  Zohier B Salah; Christopher J Charles; Paul N Humphreys; Andrew P Laws; Simon P Rout
Journal:  J Genomics       Date:  2019-01-01

10.  NapB Restores cytochrome c biosynthesis in bacterial dsbD-deficient mutants.

Authors:  Kailun Guo; Xue Feng; Weining Sun; Sirui Han; Shihua Wu; Haichun Gao
Journal:  Commun Biol       Date:  2022-01-21
  10 in total

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