| Literature DB >> 26350383 |
Konstantinos Nikopoulos1, Almudena Avila-Fernandez2,3, Marta Corton2,3, Maria Isabel Lopez-Molina3,4, Raquel Perez-Carro2,3, Lara Bontadelli1, Silvio Alessandro Di Gioia1, Olga Zurita2,3, Blanca Garcia-Sandoval3,4, Carlo Rivolta1, Carmen Ayuso2,3.
Abstract
Inherited retinal dystrophies present extensive phenotypic and genetic heterogeneity, posing a challenge for patients' molecular and clinical diagnoses. In this study, we wanted to clinically characterize and investigate the molecular etiology of an atypical form of autosomal recessive retinal dystrophy in two consanguineous Spanish families. Affected members of the respective families exhibited an array of clinical features including reduced visual acuity, photophobia, defective color vision, reduced or absent ERG responses, macular atrophy and pigmentary deposits in the peripheral retina. Genetic investigation included autozygosity mapping coupled with exome sequencing in the first family, whereas autozygome-guided candidate gene screening was performed by means of Sanger DNA sequencing in the second family. Our approach revealed nucleotide changes in CDHR1; a homozygous missense variant (c.1720C>G, p.P574A) and a homozygous single base transition (c.1485+2T>C) affecting the canonical 5' splice site of intron 13, respectively. Both changes co-segregated with the disease and were absent among cohorts of unrelated control individuals. To date, only five mutations in CDHR1 have been identified, all resulting in premature stop codons leading to mRNA nonsense mediated decay. Our work reports two previously unidentified homozygous mutations in CDHR1 further expanding the mutational spectrum of this gene.Entities:
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Year: 2015 PMID: 26350383 PMCID: PMC4642573 DOI: 10.1038/srep13902
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Pedigrees of patients analyzed and mutations identified in this work.
(a) Pedigree of family RP-0763. The parents are first cousins. Open and closed symbols represent unaffected and affected individuals, respectively. m1/m1 refers to the homozygous presence of the mutation c.1720C>G in CDHR1 (NM_033100.3), whereas m1/+ refers to its heterozygous presence. The arrow indicates the proband for this family. (b) Chromatograms of Sanger DNA sequencing surrounding the CDHR1 variant c.1720C>G are shown for patient II:2 and the healthy carrier individual II:1. (c) Pedigree of family RP-0043 in which parents are also first cousins. m2/m2 refers to the homozygous presence of the mutation c.1485 + 2T>C in CDHR1 (NM_033100.3), whereas m2/+ refers to its heterozygous presence. The arrow indicates the proband for this family. (d) Chromatogram of Sanger DNA sequencing surrounding the CDHR1 variant c.1485 + 2T >C is shown for patient II:1 and the healthy parent I:1.
Figure 2Fundus photographs and optical coherence tomography (OCT) of affected individual II:2 from family RP-0763.
(a) Fundus photograph taken at the age of 45 (left and right eye) demonstrating a pale optic disc and attenuated blood retinal vessels. Macular involvement is noted with the presence of spotted hyperpigmentation (yellowish dots) and annular RPE with central sparing of the fovea (bull’s eye maculopathy). (b) Fundus photograph of the retinal periphery (left and right eye) demonstrating the presence of pigmentary changes in the form of scarce bone spicule pigmentation. (c) OCT of left and right eye demonstrating a decreased foveal depression.
Figure 3Multifocal electroretinography (mfERG) of patient II:2 from family RP-0763, for the left (a) and right (b) eye.
The mfERG shows a reduced amplitude in all records at the age 45.
Clinical features of patients with mutations in CDHR1.
| RP-0763: II:2 | p.P574A/ p.P574A | Photophobia, photopsia and color disturbances (30 yrs), Progressive loss of VA (33 yrs), NB (33 yrs) and field constriction (34 yrs) | 0.8/0.7 | Tubular visual field with a small island of central vision and a temporal island (42 yrs). Absolute scotoma (45 yrs) | Full field was non-recordable and mfERG amplitude was decreased in all records. | Pale optic disc, narrow vessels, scarce bone spicule pigmentation in mid-periphery, yellowish dots in macula and bull’s eye maculopathy | Non-specific mild abnormalities | Decreased foveal depression | Posterior subcapsular cataract |
| RP-0043: II:1 | c.1485 + 2T>C/ c.1485 + 2T>C | NB (26 yrs) and field constriction (26 yrs) | 0.2/1.0 (49 yrs) | Tubular visual field with temporal islands | non-recordable | Pale optic disc, narrow vessels and bone spicule pigmentation in mid-periphery | NCD | NCD | NCD |
| RP-0043: II:2 | c.1485 + 2T>C/ c.1485 + 2T>C | Color disturbances and field constriction (32 yrs) | 0.12/1.0 | Relative central scotoma and some peripheral islands | NCD | Small optic disc, unstructured macula and atrophy in the periphery | Altered | NCD | Superficial punctate keratitis |
ID, identification code; yrs, years; BCVA, best corrected visual acuity; OD, right eye; OS, left eye; ERG, electroretinogram; mf, multifocal; OCT, optical coherence tomography; NB, night blindness; VA visual acuity; RPE, retinal pigment epithelium; NCD, no clinical data.
Homozygosity mapping results in families RP-0763 and RP-0043.
| 1 | 1 | 53.8–81.1 | 27.34 | 220 | ||
| 2 | 13 | 102.1–111.7 | 9.53 | 41 | ||
| 3 | 10 | 85.7–91.3 | 5.71 | 78 | ||
| 4 | 9 | 65.3–70.8 | 5.5 | 29 | ||
| 5 | 17 | 72.5–74.8 | 2.34 | 48 | ||
| 1 | 10 | 72–118.9 | 46.9 | 401 | ||
| 2 | 4 | 144.5–162.2 | 17.7 | 83 | ||
| 3 | 10 | 14–27.8 | 13.8 | 78 | ||
| 4 | 19 | 36–38.5 | 2.5 | 84 | ||
| 5 | 3 | 95.6–97.4 | 1.8 | 2 | ||
| 6 | 22 | 43.9–45.2 | 1.3 | 17 | ||
| 7 | 4 | 183.7–184.7 | 1 | 11 |
Chr, Chromosome; RD, Retinal degeneration. Regions of homozygosity and regions’ sizes are provided based on the human reference sequence (hg19) and are expressed in megabases (Mb).
Figure 4Amino acid sequence alignment of human CDHR1 in the area spanning the missense variant p.P574A and topology of the CDHR1 protein indicating the position of all reported mutations.
(a) Amino acid sequence alignment of human CDHR1 with orthologous proteins from mouse, dog, cow, chicken, frog, and zebrafish. Ten upstream and 10 downstream amino acids from the missense variant P574A are depicted. Residues identical to the human sequence across all sequences are black on a white background whereas different amino acids are indicated in white on a grey background. The amino acid residue at the position of the missense change is indicated in bold. (b) Topology of the CDHR1 protein and the position all reported mutations. The intracellular domain (IC) is shown as a purple line; the transmembrane domain (TM) is indicated in a box with grey background. The ectodomains (EC) are indicated in red oval shapes with the linker regions as blue boxes in between the ectodomains. Mutations reported in previous studies are indicated depicted in black whereas mutations identified in this work are indicated in red.
In silico analysis of CDHR1 intron 13 donor splice site potential as predicted by NetGene 2 Server and the Human Splicing Finder (HSF) analysis tools.
| Chr10: 85,970,922–85,970,923 | HSF | aca | aca | 2.99 | −4.75 | −285.86 |
| NetGene2 | 0.273 | 0.043 | 15.75 |
The nucleotide position of the donor splice site is provided based on the human reference sequence (hg19). The two invariant nucleotides of the canonical 5′ splice site are bolded in the wild-type (wt) sequence. The mutant nucleotide is underlined in the box of the mutant sequence. The reference score refers to the wt sequence of the donor splice site. The Mutations Scores refers to the mutant sequence of the donor splice site. The Variation index measures the ratio of the mutation score divided by the reference score, expressed as a percentage.