Literature DB >> 26346852

CHEMICAL AND BIOLOGICAL DESCRIPTOR INTEGRATION IMPROVES COMPUTATIONAL MODELING OF IN VIVO RAT TOXICITY.

Cristian G Bologa1, Oleg Ursu1, Liliana Halip2, Ramona Curpăn2, Tudor I Oprea1.   

Abstract

Computational toxicology is a new discipline in the area of computational molecular sciences, which is rapidly developing as a result of the public interest stirred by several European and US initiatives. Here, we report the use of primary high throughput screening (HTS) data as biological descriptors to complement the chemical descriptors for the modelling of the acute toxicity. The combination of biological and chemical descriptors was performed on the median lethal dose following oral administration in rats (rat LD50). The hybrid model developed based on chemical and biological descriptors is superior to models based on the chemical or biological description alone. Using this model, besides the accurately prediction of a compound's toxicity we also identified molecular fragments whose presence may contribute to increase or decrease of the toxicity.

Entities:  

Year:  2015        PMID: 26346852      PMCID: PMC4557807     

Source DB:  PubMed          Journal:  Rev Roum Chim        ISSN: 0035-3930            Impact factor:   0.278


  11 in total

Review 1.  Computer systems for the prediction of toxicity: an update.

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Journal:  Adv Drug Deliv Rev       Date:  2002-03-31       Impact factor: 15.470

2.  The price of innovation: new estimates of drug development costs.

Authors:  Joseph A DiMasi; Ronald W Hansen; Henry G Grabowski
Journal:  J Health Econ       Date:  2003-03       Impact factor: 3.883

3.  NIH Molecular Libraries Initiative.

Authors:  Christopher P Austin; Linda S Brady; Thomas R Insel; Francis S Collins
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4.  Extended-connectivity fingerprints.

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Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

5.  Computer prediction of possible toxic action from chemical structure; the DEREK system.

Authors:  D M Sanderson; C G Earnshaw
Journal:  Hum Exp Toxicol       Date:  1991-07       Impact factor: 2.903

6.  Development, interpretation and temporal evaluation of a global QSAR of hERG electrophysiology screening data.

Authors:  Claire L Gavaghan; Catrin Hasselgren Arnby; Niklas Blomberg; Gert Strandlund; Scott Boyer
Journal:  J Comput Aided Mol Des       Date:  2007-03-24       Impact factor: 3.686

Review 7.  Web tools for predictive toxicology model building.

Authors:  Nina Jeliazkova
Journal:  Expert Opin Drug Metab Toxicol       Date:  2012-05-12       Impact factor: 4.481

Review 8.  Progress in computational toxicology.

Authors:  Sean Ekins
Journal:  J Pharmacol Toxicol Methods       Date:  2013-12-20       Impact factor: 1.950

Review 9.  Computational toxicology in drug development.

Authors:  Wolfgang Muster; Alexander Breidenbach; Holger Fischer; Stephan Kirchner; Lutz Müller; Axel Pähler
Journal:  Drug Discov Today       Date:  2008-02-20       Impact factor: 7.851

10.  Use of in vitro HTS-derived concentration-response data as biological descriptors improves the accuracy of QSAR models of in vivo toxicity.

Authors:  Alexander Sedykh; Hao Zhu; Hao Tang; Liying Zhang; Ann Richard; Ivan Rusyn; Alexander Tropsha
Journal:  Environ Health Perspect       Date:  2010-10-27       Impact factor: 9.031

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  3 in total

Review 1.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

2.  Direct Prediction of Physicochemical Properties and Toxicities of Chemicals from Analytical Descriptors by GC-MS.

Authors:  Yasuyuki Zushi
Journal:  Anal Chem       Date:  2022-06-14       Impact factor: 8.008

3.  Exploring organic photosensitizers based on hemicyanine derivatives: a sustainable approach for preparation of amide linkages.

Authors:  Harnimarta Deol; Manoj Kumar; Vandana Bhalla
Journal:  RSC Adv       Date:  2018-09-05       Impact factor: 4.036

  3 in total

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