Literature DB >> 22577953

Web tools for predictive toxicology model building.

Nina Jeliazkova1.   

Abstract

INTRODUCTION: The development and use of web tools in chemistry has accumulated more than 15 years of history already. Powered by the advances in the Internet technologies, the current generation of web systems are starting to expand into areas, traditional for desktop applications. The web platforms integrate data storage, cheminformatics and data analysis tools. The ease of use and the collaborative potential of the web is compelling, despite the challenges. AREAS COVERED: The topic of this review is a set of recently published web tools that facilitate predictive toxicology model building. The focus is on software platforms, offering web access to chemical structure-based methods, although some of the frameworks could also provide bioinformatics or hybrid data analysis functionalities. A number of historical and current developments are cited. In order to provide comparable assessment, the following characteristics are considered: support for workflows, descriptor calculations, visualization, modeling algorithms, data management and data sharing capabilities, availability of GUI or programmatic access and implementation details. EXPERT OPINION: The success of the Web is largely due to its highly decentralized, yet sufficiently interoperable model for information access. The expected future convergence between cheminformatics and bioinformatics databases provides new challenges toward management and analysis of large data sets. The web tools in predictive toxicology will likely continue to evolve toward the right mix of flexibility, performance, scalability, interoperability, sets of unique features offered, friendly user interfaces, programmatic access for advanced users, platform independence, results reproducibility, curation and crowdsourcing utilities, collaborative sharing and secure access.

Mesh:

Year:  2012        PMID: 22577953     DOI: 10.1517/17425255.2012.685158

Source DB:  PubMed          Journal:  Expert Opin Drug Metab Toxicol        ISSN: 1742-5255            Impact factor:   4.481


  4 in total

1.  CHEMICAL AND BIOLOGICAL DESCRIPTOR INTEGRATION IMPROVES COMPUTATIONAL MODELING OF IN VIVO RAT TOXICITY.

Authors:  Cristian G Bologa; Oleg Ursu; Liliana Halip; Ramona Curpăn; Tudor I Oprea
Journal:  Rev Roum Chim       Date:  2015 Feb-Mar       Impact factor: 0.278

2.  A mechanistic, model-based approach to safety assessment in clinical development.

Authors:  J Lippert; M Brosch; O von Kampen; M Meyer; H-U Siegmund; C Schafmayer; T Becker; B Laffert; L Görlitz; S Schreiber; P J Neuvonen; M Niemi; J Hampe; L Kuepfer
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2012-11-07

3.  The eNanoMapper database for nanomaterial safety information.

Authors:  Nina Jeliazkova; Charalampos Chomenidis; Philip Doganis; Bengt Fadeel; Roland Grafström; Barry Hardy; Janna Hastings; Markus Hegi; Vedrin Jeliazkov; Nikolay Kochev; Pekka Kohonen; Cristian R Munteanu; Haralambos Sarimveis; Bart Smeets; Pantelis Sopasakis; Georgia Tsiliki; David Vorgrimmler; Egon Willighagen
Journal:  Beilstein J Nanotechnol       Date:  2015-07-27       Impact factor: 3.649

4.  XMetDB: an open access database for xenobiotic metabolism.

Authors:  Ola Spjuth; Patrik Rydberg; Egon L Willighagen; Chris T Evelo; Nina Jeliazkova
Journal:  J Cheminform       Date:  2016-09-15       Impact factor: 5.514

  4 in total

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