Literature DB >> 26346528

Membrane Interaction of the Factor VIIIa Discoidin Domains in Atomistic Detail.

Jesper J Madsen1,2, Y Zenmei Ohkubo, Günther H Peters2, Johan H Faber1, Emad Tajkhorshid, Ole H Olsen1.   

Abstract

A recently developed membrane-mimetic model was applied to study membrane interaction and binding of the two anchoring C2-like discoidin domains of human coagulation factor VIIIa (FVIIIa), the C1 and C2 domains. Both individual domains, FVIII C1 and FVIII C2, were observed to bind the phospholipid membrane by partial or full insertion of their extruding loops (the spikes). However, the two domains adopted different molecular orientations in their membrane-bound states; FVIII C2 roughly was positioned normal to the membrane plane, while FVIII C1 displayed a multitude of tilted orientations. The results indicate that FVIII C1 may be important in modulating the orientation of the FVIIIa molecule to optimize the interaction with FIXa, which is anchored to the membrane via its γ-carboxyglutamic acid-rich (Gla) domain. Additionally, a structural change was observed in FVIII C1 in the coiled main chain leading the first spike. A tight interaction with one lipid per domain, similar to what has been suggested for the homologous FVa C2, is characterized. Finally, we rationalize known FVIII antibody epitopes and the scarcity of documented hemophilic missense mutations related to improper membrane binding of FVIIIa, based on the prevalent nonspecificity of ionic interactions in the simulated membrane-bound states of FVIII C1 and FVIII C2.

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Year:  2015        PMID: 26346528      PMCID: PMC5050047          DOI: 10.1021/acs.biochem.5b00417

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  58 in total

1.  WATERFALL SEQUENCE FOR INTRINSIC BLOOD CLOTTING.

Authors:  E W DAVIE; O D RATNOFF
Journal:  Science       Date:  1964-09-18       Impact factor: 47.728

2.  Replica exchange molecular dynamics simulations of amyloid peptide aggregation.

Authors:  M Cecchini; F Rao; M Seeber; A Caflisch
Journal:  J Chem Phys       Date:  2004-12-01       Impact factor: 3.488

Review 3.  Membrane recognition by phospholipid-binding domains.

Authors:  Mark A Lemmon
Journal:  Nat Rev Mol Cell Biol       Date:  2008-02       Impact factor: 94.444

4.  Factors VIII and V swap fatty feet.

Authors:  Koen Mertens; Alexander B Meijer
Journal:  Blood       Date:  2012-08-30       Impact factor: 22.113

5.  Four hydrophobic amino acids of the factor VIII C2 domain are constituents of both the membrane-binding and von Willebrand factor-binding motifs.

Authors:  Gary E Gilbert; Randal J Kaufman; Andrew A Arena; Hongzhi Miao; Steven W Pipe
Journal:  J Biol Chem       Date:  2001-11-06       Impact factor: 5.157

6.  Hemophilic factor VIII C1- and C2-domain missense mutations and their modeling to the 1.5-angstrom human C2-domain crystal structure.

Authors:  M L Liu; B W Shen; S Nakaya; K P Pratt; K Fujikawa; E W Davie; B L Stoddard; A R Thompson
Journal:  Blood       Date:  2000-08-01       Impact factor: 22.113

7.  Membrane-binding properties of the Factor VIII C2 domain.

Authors:  Valerie A Novakovic; David B Cullinan; Hironao Wakabayashi; Philip J Fay; James D Baleja; Gary E Gilbert
Journal:  Biochem J       Date:  2011-04-01       Impact factor: 3.857

8.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

9.  The tertiary structure and domain organization of coagulation factor VIII.

Authors:  Betty W Shen; Paul Clint Spiegel; Chong-Hwan Chang; Jae-Wook Huh; Jung-Sik Lee; Jeanman Kim; Young-Ho Kim; Barry L Stoddard
Journal:  Blood       Date:  2007-10-26       Impact factor: 22.113

10.  Replacing the factor VIII C1 domain with a second C2 domain reduces factor VIII stability and affinity for factor IXa.

Authors:  Hironao Wakabayashi; Philip J Fay
Journal:  J Biol Chem       Date:  2013-09-12       Impact factor: 5.157

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  9 in total

1.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

2.  Coupling X-Ray Reflectivity and In Silico Binding to Yield Dynamics of Membrane Recognition by Tim1.

Authors:  Gregory T Tietjen; Javier L Baylon; Daniel Kerr; Zhiliang Gong; J Michael Henderson; Charles T R Heffern; Mati Meron; Binhua Lin; Mark L Schlossman; Erin J Adams; Emad Tajkhorshid; Ka Yee C Lee
Journal:  Biophys J       Date:  2017-10-03       Impact factor: 4.033

3.  Lipid specificity of the membrane binding domain of coagulation factor X.

Authors:  M P Muller; Y Wang; J H Morrissey; E Tajkhorshid
Journal:  J Thromb Haemost       Date:  2017-09-01       Impact factor: 5.824

4.  Extension of the Highly Mobile Membrane Mimetic to Transmembrane Systems through Customized in Silico Solvents.

Authors:  Josh V Vermaas; Taras V Pogorelov; Emad Tajkhorshid
Journal:  J Phys Chem B       Date:  2017-03-13       Impact factor: 2.991

Review 5.  Atomic-level description of protein-lipid interactions using an accelerated membrane model.

Authors:  Javier L Baylon; Josh V Vermaas; Melanie P Muller; Mark J Arcario; Taras V Pogorelov; Emad Tajkhorshid
Journal:  Biochim Biophys Acta       Date:  2016-03-02

6.  SAXS analysis of the intrinsic tenase complex bound to a lipid nanodisc highlights intermolecular contacts between factors VIIIa/IXa.

Authors:  Kenneth C Childers; Shaun C Peters; Pete Lollar; Harold Trent Spencer; Christopher B Doering; Paul C Spiegel
Journal:  Blood Adv       Date:  2022-06-14

7.  Molecular determinants of the factor VIII/von Willebrand factor complex revealed by BIVV001 cryo-electron microscopy.

Authors:  James R Fuller; Kevin E Knockenhauer; Nina C Leksa; Robert T Peters; Joseph D Batchelor
Journal:  Blood       Date:  2021-05-27       Impact factor: 22.113

Review 8.  Uncovering Membrane-Bound Models of Coagulation Factors by Combined Experimental and Computational Approaches.

Authors:  Y Zenmei Ohkubo; Jesper J Madsen
Journal:  Thromb Haemost       Date:  2021-07-02       Impact factor: 5.249

9.  Structure of Blood Coagulation Factor VIII in Complex With an Anti-C2 Domain Non-Classical, Pathogenic Antibody Inhibitor.

Authors:  Estelle K Ronayne; Shaun C Peters; Joseph S Gish; Celena Wilson; H Trent Spencer; Christopher B Doering; Pete Lollar; P Clint Spiegel; Kenneth C Childers
Journal:  Front Immunol       Date:  2021-06-10       Impact factor: 7.561

  9 in total

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