Literature DB >> 26345531

Fast linear solver for radiative transport equation with multiple right hand sides in diffuse optical tomography.

Jingfei Jia1, Hyun K Kim2, Andreas H Hielscher3.   

Abstract

It is well known that radiative transfer equation (RTE) provides more accurate tomographic results than its diffusion approximation (DA). However, RTE-based tomographic reconstruction codes have limited applicability in practice due to their high computational cost. In this article, we propose a new efficient method for solving the RTE forward problem with multiple light sources in an all-at-once manner instead of solving it for each source separately. To this end, we introduce here a novel linear solver called block biconjugate gradient stabilized method (block BiCGStab) that makes full use of the shared information between different right hand sides to accelerate solution convergence. Two parallelized block BiCGStab methods are proposed for additional acceleration under limited threads situation. We evaluate the performance of this algorithm with numerical simulation studies involving the Delta-Eddington approximation to the scattering phase function. The results show that the single threading block RTE solver proposed here reduces computation time by a factor of 1.5~3 as compared to the traditional sequential solution method and the parallel block solver by a factor of 1.5 as compared to the traditional parallel sequential method. This block linear solver is, moreover, independent of discretization schemes and preconditioners used; thus further acceleration and higher accuracy can be expected when combined with other existing discretization schemes or preconditioners.

Entities:  

Keywords:  Block BiCGStab algorithm; Diffuse optical tomography; Multi-threading acceleration; Multiple right hand sides; Radiative transfer equation

Year:  2015        PMID: 26345531      PMCID: PMC4556172          DOI: 10.1016/j.jqsrt.2015.07.015

Source DB:  PubMed          Journal:  J Quant Spectrosc Radiat Transf        ISSN: 0022-4073            Impact factor:   2.468


  16 in total

1.  Concurrent MRI and diffuse optical tomography of breast after indocyanine green enhancement.

Authors:  V Ntziachristos; A G Yodh; M Schnall; B Chance
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

Review 2.  Optical tomographic imaging of small animals.

Authors:  Andreas H Hielscher
Journal:  Curr Opin Biotechnol       Date:  2005-02       Impact factor: 9.740

3.  Computer-aided diagnosis of rheumatoid arthritis with optical tomography, Part 1: feature extraction.

Authors:  Ludguier D Montejo; Jingfei Jia; Hyun K Kim; Uwe J Netz; Sabine Blaschke; Gerhard A Müller; Andreas H Hielscher
Journal:  J Biomed Opt       Date:  2013-07       Impact factor: 3.170

4.  Optical biomarkers for breast cancer derived from dynamic diffuse optical tomography.

Authors:  Molly L Flexman; Hyun K Kim; Jacqueline E Gunther; Emerson A Lim; Maria C Alvarez; Elise Desperito; Kevin Kalinsky; Dawn L Hershman; Andreas H Hielscher
Journal:  J Biomed Opt       Date:  2013-09       Impact factor: 3.170

5.  Comparison of finite-difference transport and diffusion calculations for photon migration in homogeneous and heterogeneous tissues.

Authors:  A H Hielscher; R E Alcouffe; R L Barbour
Journal:  Phys Med Biol       Date:  1998-05       Impact factor: 3.609

6.  Parallel multigrid solver of radiative transfer equation for photon transport via graphics processing unit.

Authors:  Hao Gao; Lan Phan; Yuting Lin
Journal:  J Biomed Opt       Date:  2012-09       Impact factor: 3.170

7.  Digital optical tomography system for dynamic breast imaging.

Authors:  Molly L Flexman; Michael A Khalil; Rabah Al Abdi; Hyun K Kim; Christopher J Fong; Elise Desperito; Dawn L Hershman; Randall L Barbour; Andreas H Hielscher
Journal:  J Biomed Opt       Date:  2011-07       Impact factor: 3.170

8.  Sagittal laser optical tomography for imaging of rheumatoid finger joints.

Authors:  Andreas H Hielscher; Alexander D Klose; Alexander K Scheel; Bryte Moa-Anderson; Marina Backhaus; Uwe Netz; Jürgen Beuthan
Journal:  Phys Med Biol       Date:  2004-04-07       Impact factor: 3.609

9.  Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans.

Authors:  Alper Corlu; Regine Choe; Turgut Durduran; Mark A Rosen; Martin Schweiger; Simon R Arridge; Mitchell D Schnall; Arjun G Yodh
Journal:  Opt Express       Date:  2007-05-28       Impact factor: 3.894

10.  Dynamic diffuse optical tomography imaging of peripheral arterial disease.

Authors:  Michael A Khalil; Hyun K Kim; In-Kyong Kim; Molly Flexman; Rajeev Dayal; Gautam Shrikhande; Andreas H Hielscher
Journal:  Biomed Opt Express       Date:  2012-08-30       Impact factor: 3.732

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  1 in total

1.  Ultrafast and Ultrahigh-Resolution Diffuse Optical Tomography for Brain Imaging with Sensitivity Equation based Noniterative Sparse Optical Reconstruction (SENSOR).

Authors:  Hyun Keol Kim; Yongyi Zhao; Ankit Raghuram; Ashok Veeraraghavan; Jacob Robinson; Andreas H Hielscher
Journal:  J Quant Spectrosc Radiat Transf       Date:  2021-09-20       Impact factor: 2.468

  1 in total

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