Literature DB >> 26341895

Cell-free DNA: Preanalytical variables.

Abel Jacobus Bronkhorst1, Janine Aucamp2, Piet J Pretorius2.   

Abstract

Since the discovery of cell-free DNA (cfDNA) in human blood, most studies have focused on diagnostic and prognostic uses of these markers for solid tumors. Except for some prenatal tests and BEAMing, cfDNA analysis has not yet been translated to clinical practice and routine application appears distant. This can be attributed to overlapping factors: (i) a lack of knowledge regarding the origin and function of cfDNA, (ii) insufficient molecular characterization, and (iii) the absence of an analytical consensus. In this review, we address the latter determinant and focus specifically on quantitative analysis of cfDNA. While the literature reports limited value for a single quantitative assessment, cfDNA kinetic assessment will be an essential component to qualitative characterization. In order to establish quantitative analysis for accurate kinetic assessments, process optimization and standardization are crucial. This report elucidates the most confounding variables of each preanalytic step that must be considered for optimal analysis.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cancer; Cell-free DNA; Preanalytical factors; Prenatal diagnostics; Quantitative analysis

Mesh:

Substances:

Year:  2015        PMID: 26341895     DOI: 10.1016/j.cca.2015.08.028

Source DB:  PubMed          Journal:  Clin Chim Acta        ISSN: 0009-8981            Impact factor:   3.786


  41 in total

1.  Kinetic analysis, size profiling, and bioenergetic association of DNA released by selected cell lines in vitro.

Authors:  Janine Aucamp; Abel J Bronkhorst; Dimetrie L Peters; Hayley C Van Dyk; Francois H Van der Westhuizen; Piet J Pretorius
Journal:  Cell Mol Life Sci       Date:  2017-03-18       Impact factor: 9.261

2.  Evaluation of Streck BCT and PAXgene Stabilised Blood Collection Tubes for Cell-Free Circulating DNA Studies in Plasma.

Authors:  Kristina Warton; Nicole L Yuwono; Mark J Cowley; Mark J McCabe; Alwin So; Caroline E Ford
Journal:  Mol Diagn Ther       Date:  2017-10       Impact factor: 4.074

Review 3.  A historical and evolutionary perspective on the biological significance of circulating DNA and extracellular vesicles.

Authors:  Janine Aucamp; Abel J Bronkhorst; Christoffel P S Badenhorst; Piet J Pretorius
Journal:  Cell Mol Life Sci       Date:  2016-09-20       Impact factor: 9.261

4.  Association of clinical outcomes in metastatic breast cancer patients with circulating tumour cell and circulating cell-free DNA.

Authors:  Zhong Ye; Chun Wang; Shaogui Wan; Zhaomei Mu; Zhenchao Zhang; Maysa M Abu-Khalaf; Frederick M Fellin; Daniel P Silver; Manish Neupane; Rebecca J Jaslow; Saveri Bhattacharya; Theodore N Tsangaris; Inna Chervoneva; Adam Berger; Laura Austin; Juan P Palazzo; Ronald E Myers; Neha Pancholy; Darayus Toorkey; Kaelan Yao; Max Krall; Xiuling Li; Xiaobing Chen; Xiuhong Fu; Jinliang Xing; Lifang Hou; Qiang Wei; Bingshan Li; Massimo Cristofanilli; Hushan Yang
Journal:  Eur J Cancer       Date:  2018-12-04       Impact factor: 9.162

5.  Harmonizing Cell-Free DNA Collection and Processing Practices through Evidence-Based Guidance.

Authors:  Sarah R Greytak; Kelly B Engel; Sonya Parpart-Li; Muhammed Murtaza; Abel J Bronkhorst; Mark D Pertile; Helen M Moore
Journal:  Clin Cancer Res       Date:  2020-03-02       Impact factor: 12.531

6.  Cell-free DNA concentration and fragment size fraction correlate with FDG PET/CT-derived parameters in NSCLC patients.

Authors:  J M González de Aledo-Castillo; S Casanueva-Eliceiry; A Soler-Perromat; D Fuster; V Pastor; N Reguart; N Viñolas; R Reyes; I Vollmer; P Paredes; J A Puig-Butillé
Journal:  Eur J Nucl Med Mol Imaging       Date:  2021-04-02       Impact factor: 9.236

Review 7.  Circulating tumor DNA in colorectal cancer: opportunities and challenges.

Authors:  Feifei Bi; Qiwei Wang; Qian Dong; Yuanhe Wang; Liqun Zhang; Jingdong Zhang
Journal:  Am J Transl Res       Date:  2020-03-15       Impact factor: 4.060

8.  Microfluidic-based solid phase extraction of cell free DNA.

Authors:  Camila D M Campos; Sachindra S T Gamage; Joshua M Jackson; Malgorzata A Witek; Daniel S Park; Michael C Murphy; Andrew K Godwin; Steven A Soper
Journal:  Lab Chip       Date:  2018-11-06       Impact factor: 6.799

9.  Feasibility of Cell-Free DNA Collection and Clonal Immunoglobulin Sequencing in South African Patients With HIV-Associated Lymphoma.

Authors:  Samantha L Vogt; Moosa Patel; Atul Lakha; Vinitha Philip; Tanvier Omar; Philippa Ashmore; Sugeshnee Pather; Lisa M Haley; Gang Zheng; Jennifer Stone; Elizabeth Mayne; Wendy Stevens; Nina Wagner-Johnston; Christopher D Gocke; Neil A Martinson; Richard F Ambinder; Rena R Xian
Journal:  JCO Glob Oncol       Date:  2021-04

10.  Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome.

Authors:  Ruben Van Paemel; Andries De Koker; Christa Caggiano; Annelien Morlion; Pieter Mestdagh; Bram De Wilde; Jo Vandesompele; Katleen De Preter
Journal:  Epigenetics       Date:  2020-10-19       Impact factor: 4.528

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