Literature DB >> 26341510

Thiosulfate-Hydrogen Peroxide Redox Oscillator as pH Driver for Ribozyme Activity in the RNA World.

Rowena Ball1, John Brindley2.   

Abstract

The RNA world of more than 3.7 billion years ago may have drawn on thermal and pH oscillations set up by the oxidation of thiosulfate by hydrogen peroxide (the THP oscillator) as a power source to drive replication. Since this primordial RNA also must have developed enzyme functionalities, in this work we examine the responses of two simple ribozymes to a THP periodic drive, using experimental rate and thermochemical data in a dynamical model for the coupled, self-consistent evolution of all reactants and intermediates. The resulting time traces show that ribozyme performance can be enhanced under pH cycling, and that thermal cycling may have been necessary to achieve large performance gains. We discuss three important ways in which the dynamic hydrogen peroxide medium may have acted as an agent for development of the RNA world towards a cellular world: proton gradients, resolution of the ribozyme versus replication paradox, and vesicle formation.

Entities:  

Keywords:  Hydrogen peroxide; RNA world; Ribozyme; Thermal cycling; pH oscillator

Mesh:

Substances:

Year:  2015        PMID: 26341510     DOI: 10.1007/s11084-015-9448-z

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  20 in total

1.  Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism.

Authors:  P MITCHELL
Journal:  Nature       Date:  1961-07-08       Impact factor: 49.962

2.  Vesicle-to-micelle oscillations and spatial patterns.

Authors:  István Lagzi; Dawei Wang; Bartlomiej Kowalczyk; Bartosz A Grzybowski
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3.  Extreme accumulation of nucleotides in simulated hydrothermal pore systems.

Authors:  Philipp Baaske; Franz M Weinert; Stefan Duhr; Kono H Lemke; Michael J Russell; Dieter Braun
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4.  The paradox of dual roles in the RNA world: resolving the conflict between stable folding and templating ability.

Authors:  Nikola A Ivica; Benedikt Obermayer; Gregory W Campbell; Sudha Rajamani; Ulrich Gerland; Irene A Chen
Journal:  J Mol Evol       Date:  2013-09       Impact factor: 2.395

5.  Mixed-mode oscillations in a homogeneous pH-oscillatory chemical reaction system.

Authors:  Daniel Bakes; Lenka Schreiberová; Igor Schreiber; Marcus J B Hauser
Journal:  Chaos       Date:  2008-03       Impact factor: 3.642

Review 6.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

7.  Heat flux across an open pore enables the continuous replication and selection of oligonucleotides towards increasing length.

Authors:  Moritz Kreysing; Lorenz Keil; Simon Lanzmich; Dieter Braun
Journal:  Nat Chem       Date:  2015-01-26       Impact factor: 24.427

Review 8.  The hammerhead ribozyme: structure, catalysis, and gene regulation.

Authors:  William G Scott; Lucas H Horan; Monika Martick
Journal:  Prog Mol Biol Transl Sci       Date:  2013       Impact factor: 3.622

9.  Hydrogen peroxide thermochemical oscillator as driver for primordial RNA replication.

Authors:  Rowena Ball; John Brindley
Journal:  J R Soc Interface       Date:  2014-03-19       Impact factor: 4.118

10.  Periodic Vesicle Formation in Tectonic Fault Zones--an Ideal Scenario for Molecular Evolution.

Authors:  Christian Mayer; Ulrich Schreiber; María J Dávila
Journal:  Orig Life Evol Biosph       Date:  2015-02-27       Impact factor: 1.950

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  3 in total

1.  The life story of hydrogen peroxide II: a periodic pH and thermochemical drive for the RNA world.

Authors:  Rowena Ball; John Brindley
Journal:  J R Soc Interface       Date:  2015-08-06       Impact factor: 4.118

2.  The Life Story of Hydrogen Peroxide III: Chirality and Physical Effects at the Dawn of Life.

Authors:  Rowena Ball; John Brindley
Journal:  Orig Life Evol Biosph       Date:  2015-09-23       Impact factor: 1.950

3.  Tectonically-driven oxidant production in the hot biosphere.

Authors:  Jordan Stone; John O Edgar; Jamie A Gould; Jon Telling
Journal:  Nat Commun       Date:  2022-08-08       Impact factor: 17.694

  3 in total

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