Literature DB >> 26202683

The life story of hydrogen peroxide II: a periodic pH and thermochemical drive for the RNA world.

Rowena Ball1, John Brindley2.   

Abstract

It is now accepted that primordial non-cellular RNA communities must have been subject to a periodic drive in order to replicate and prosper. We have proposed the oxidation of thiosulfate by hydrogen peroxide as this drive. This reaction system behaves as (i) a thermochemical and (ii) a pH oscillator, and in this work, we unify (i) and (ii) for the first time. We report thermally self-consistent, dynamical simulations in which the system transitions smoothly from nearly isothermal pH to fully developed thermo-pH oscillatory regimes. We use this oscillator to drive simulated replication of a 39-bp RNA species. Production of replicated duplex under thermo-pH drive was significantly enhanced compared with that under purely thermochemical drive, effectively allowing longer strands to replicate. Longer strands are fitter, with more potential to evolve enzyme activity and resist degradation. We affirm that concern over the alleged toxicity of hydrogen peroxide to life is largely misplaced in the current context, we survey its occurrence in the solar system to motivate its inclusion as a biosignature in the search for life on other worlds and highlight that pH oscillations in a spatially extended, bounded system manifest as the fundamental driving force of life: a proton gradient.
© 2015 The Author(s).

Entities:  

Keywords:  RNA world; hydrogen peroxide; origin of life; pH gradients; pH oscillator; thermochemical oscillator

Mesh:

Substances:

Year:  2015        PMID: 26202683      PMCID: PMC4535408          DOI: 10.1098/rsif.2015.0366

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  34 in total

1.  Temperature-induced bifurcations in the Cu(II)-catalyzed and catalyst-free hydrogen peroxide-thiosulfate oscillating reaction.

Authors:  Ling Yuan; Qingyu Gao; Yuemin Zhao; Xiaodong Tang; Irving R Epstein
Journal:  J Phys Chem A       Date:  2010-07-08       Impact factor: 2.781

2.  Decrease of H2O2 plasma membrane permeability during adaptation to H2O2 in Saccharomyces cerevisiae.

Authors:  Miguel R Branco; H Susana Marinho; Luisa Cyrne; Fernando Antunes
Journal:  J Biol Chem       Date:  2003-11-26       Impact factor: 5.157

3.  The paradox of dual roles in the RNA world: resolving the conflict between stable folding and templating ability.

Authors:  Nikola A Ivica; Benedikt Obermayer; Gregory W Campbell; Sudha Rajamani; Ulrich Gerland; Irene A Chen
Journal:  J Mol Evol       Date:  2013-09       Impact factor: 2.395

4.  Heat flux across an open pore enables the continuous replication and selection of oligonucleotides towards increasing length.

Authors:  Moritz Kreysing; Lorenz Keil; Simon Lanzmich; Dieter Braun
Journal:  Nat Chem       Date:  2015-01-26       Impact factor: 24.427

5.  The fuel cell model of abiogenesis: a new approach to origin-of-life simulations.

Authors:  Laura M Barge; Terence P Kee; Ivria J Doloboff; Joshua M P Hampton; Mohammed Ismail; Mohamed Pourkashanian; John Zeytounian; Marc M Baum; John A Moss; Chung-Kuang Lin; Richard D Kidd; Isik Kanik
Journal:  Astrobiology       Date:  2014-03       Impact factor: 4.335

6.  A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA.

Authors:  T H Kao; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

7.  Oxygen-sulfur species distribution and kinetic analysis in the hydrogen peroxide-thiosulfate system.

Authors:  Yongchao Lu; Qingyu Gao; Li Xu; Yuemin Zhao; Irving R Epstein
Journal:  Inorg Chem       Date:  2010-07-05       Impact factor: 5.165

8.  Oxygen and hydrogen isotope evidence for a temperate climate 3.42 billion years ago.

Authors:  M T Hren; M M Tice; C P Chamberlain
Journal:  Nature       Date:  2009-11-12       Impact factor: 49.962

9.  Thiosulfate-Hydrogen Peroxide Redox Oscillator as pH Driver for Ribozyme Activity in the RNA World.

Authors:  Rowena Ball; John Brindley
Journal:  Orig Life Evol Biosph       Date:  2015-09-04       Impact factor: 1.950

10.  The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a).

Authors:  Harold S Bernhardt
Journal:  Biol Direct       Date:  2012-07-13       Impact factor: 4.540

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  5 in total

Review 1.  Reaction-diffusion processes at the nano- and microscales.

Authors:  Irving R Epstein; Bing Xu
Journal:  Nat Nanotechnol       Date:  2016-04       Impact factor: 39.213

2.  The Life Story of Hydrogen Peroxide III: Chirality and Physical Effects at the Dawn of Life.

Authors:  Rowena Ball; John Brindley
Journal:  Orig Life Evol Biosph       Date:  2015-09-23       Impact factor: 1.950

3.  Thiosulfate-Hydrogen Peroxide Redox Oscillator as pH Driver for Ribozyme Activity in the RNA World.

Authors:  Rowena Ball; John Brindley
Journal:  Orig Life Evol Biosph       Date:  2015-09-04       Impact factor: 1.950

4.  Toy trains, loaded dice and the origin of life: dimerization on mineral surfaces under periodic drive with Gaussian inputs.

Authors:  Rowena Ball; John Brindley
Journal:  R Soc Open Sci       Date:  2017-11-08       Impact factor: 2.963

5.  Modelling Bacteria-Inspired Dynamics with Networks of Interacting Chemicals.

Authors:  Tamás Bánsági; Annette F Taylor
Journal:  Life (Basel)       Date:  2019-07-29
  5 in total

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