Literature DB >> 26336831

A bistable switch in dynamic thiodepsipeptide folding and template-directed ligation.

Rakesh Mukherjee1, Rivka Cohen-Luria1, Nathaniel Wagner1, Gonen Ashkenasy2.   

Abstract

Bistable reaction networks provide living cells with chemically controlled mechanisms for long-term memory storage. Such networks are also often switchable and can be flipped from one state to the other. We target here a major challenge in systems chemistry research, namely developing synthetic, non-enzymatic, networks that mimic such a complex function. Therefore, we describe a dynamic network that depending on initial thiodepsipeptide concentrations leads to one of two distinct steady states. This bistable system is readily switched by applying the appropriate stimuli. The relationship between the reaction network topology and its capacity to invoke bistability is then analyzed by control experiments and theory. We suggest that demonstrating bistable behavior using synthetic networks further highlights their possible role in early evolution, and may shine light on potential utility for novel applications, such as chemical memories.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  bistability; depsipeptides; reaction networks; systems chemistry

Year:  2015        PMID: 26336831     DOI: 10.1002/anie.201503898

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  7 in total

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Authors:  Tamás Bánsági; Annette F Taylor
Journal:  J R Soc Interface       Date:  2017-03       Impact factor: 4.118

2.  Thioesters provide a plausible prebiotic path to proto-peptides.

Authors:  Moran Frenkel-Pinter; Marcos Bouza; Facundo M Fernández; Luke J Leman; Loren Dean Williams; Nicholas V Hud; Aikomari Guzman-Martinez
Journal:  Nat Commun       Date:  2022-05-11       Impact factor: 17.694

3.  Autocatalytic and oscillatory reaction networks that form guanidines and products of their cyclization.

Authors:  Alexander I Novichkov; Anton I Hanopolskyi; Xiaoming Miao; Linda J W Shimon; Yael Diskin-Posner; Sergey N Semenov
Journal:  Nat Commun       Date:  2021-05-20       Impact factor: 14.919

Review 4.  Towards open-ended evolution in self-replicating molecular systems.

Authors:  Herman Duim; Sijbren Otto
Journal:  Beilstein J Org Chem       Date:  2017-06-21       Impact factor: 2.883

5.  Emergence of a New Self-Replicator from a Dynamic Combinatorial Library Requires a Specific Pre-Existing Replicator.

Authors:  Yigit Altay; Meniz Tezcan; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2017-09-22       Impact factor: 15.419

6.  Modelling Bacteria-Inspired Dynamics with Networks of Interacting Chemicals.

Authors:  Tamás Bánsági; Annette F Taylor
Journal:  Life (Basel)       Date:  2019-07-29

7.  A chemically fueled non-enzymatic bistable network.

Authors:  Indrajit Maity; Nathaniel Wagner; Rakesh Mukherjee; Dharm Dev; Enrique Peacock-Lopez; Rivka Cohen-Luria; Gonen Ashkenasy
Journal:  Nat Commun       Date:  2019-10-11       Impact factor: 14.919

  7 in total

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