Literature DB >> 26333812

Information processing by simple molecular motifs and susceptibility to noise.

Siobhan S Mc Mahon1, Oleg Lenive1, Sarah Filippi2, Michael P H Stumpf3.   

Abstract

Biological organisms rely on their ability to sense and respond appropriately to their environment. The molecular mechanisms that facilitate these essential processes are however subject to a range of random effects and stochastic processes, which jointly affect the reliability of information transmission between receptors and, for example, the physiological downstream response. Information is mathematically defined in terms of the entropy; and the extent of information flowing across an information channel or signalling system is typically measured by the 'mutual information', or the reduction in the uncertainty about the output once the input signal is known. Here, we quantify how extrinsic and intrinsic noise affects the transmission of simple signals along simple motifs of molecular interaction networks. Even for very simple systems, the effects of the different sources of variability alone and in combination can give rise to bewildering complexity. In particular, extrinsic variability is apt to generate 'apparent' information that can, in extreme cases, mask the actual information that for a single system would flow between the different molecular components making up cellular signalling pathways. We show how this artificial inflation in apparent information arises and how the effects of different types of noise alone and in combination can be understood.
© 2015 The Author(s).

Entities:  

Keywords:  extrinsic noise; gene expression; intrinsic noise; mutual information; signal transduction

Mesh:

Year:  2015        PMID: 26333812      PMCID: PMC4614471          DOI: 10.1098/rsif.2015.0597

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  43 in total

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  10 in total

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