Literature DB >> 24846821

Environmental sensing, information transfer, and cellular decision-making.

Clive G Bowsher1, Peter S Swain2.   

Abstract

The recognition that gene expression can be substantially stochastic poses the question of how cells respond to dynamic environments using biochemistry that itself fluctuates. The study of cellular decision-making aims to solve this puzzle by focusing on quantitative understanding of the variation seen across isogenic populations in response to extracellular change. This behaviour is complex, and a theoretical framework within which to embed experimental results is needed. Here we review current approaches, with an emphasis on information theory, sequential data processing, and optimality arguments. We conclude by highlighting some limitations of these techniques and the importance of connecting both theory and experiment to measures of fitness.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2014        PMID: 24846821     DOI: 10.1016/j.copbio.2014.04.010

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  41 in total

1.  Robustness, Accuracy, and Cell State Heterogeneity in Biological Systems.

Authors:  Roy Wollman
Journal:  Curr Opin Syst Biol       Date:  2017-12-15

2.  Chemodetection in fluctuating environments: receptor coupling, buffering, and antagonism.

Authors:  Jean-Benoît Lalanne; Paul François
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

3.  Metabolic activity affects the response of single cells to a nutrient switch in structured populations.

Authors:  Alma Dal Co; Martin Ackermann; Simon van Vliet
Journal:  J R Soc Interface       Date:  2019-07-10       Impact factor: 4.118

4.  Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations.

Authors:  Alma Dal Co; Simon van Vliet; Martin Ackermann
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-10-07       Impact factor: 6.237

5.  A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute.

Authors:  Jonathan Desponds; Massimo Vergassola; Aleksandra M Walczak
Journal:  Elife       Date:  2020-07-29       Impact factor: 8.140

6.  Biophysical clocks face a trade-off between internal and external noise resistance.

Authors:  Weerapat Pittayakanchit; Zhiyue Lu; Justin Chew; Michael J Rust; Arvind Murugan
Journal:  Elife       Date:  2018-07-10       Impact factor: 8.140

Review 7.  Single cell proteomics in biomedicine: High-dimensional data acquisition, visualization, and analysis.

Authors:  Yapeng Su; Qihui Shi; Wei Wei
Journal:  Proteomics       Date:  2017-02       Impact factor: 3.984

8.  Limits on information transduction through amplitude and frequency regulation of transcription factor activity.

Authors:  Anders S Hansen; Erin K O'Shea
Journal:  Elife       Date:  2015-05-18       Impact factor: 8.140

9.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

10.  Information processing by simple molecular motifs and susceptibility to noise.

Authors:  Siobhan S Mc Mahon; Oleg Lenive; Sarah Filippi; Michael P H Stumpf
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.