Literature DB >> 26333662

Biogeographic calibrations for the molecular clock.

Simon Y W Ho1, K Jun Tong2, Charles S P Foster2, Andrew M Ritchie2, Nathan Lo2, Michael D Crisp3.   

Abstract

Molecular estimates of evolutionary timescales have an important role in a range of biological studies. Such estimates can be made using methods based on molecular clocks, including models that are able to account for rate variation across lineages. All clock models share a dependence on calibrations, which enable estimates to be given in absolute time units. There are many available methods for incorporating fossil calibrations, but geological and climatic data can also provide useful calibrations for molecular clocks. However, a number of strong assumptions need to be made when using these biogeographic calibrations, leading to wide variation in their reliability and precision. In this review, we describe the nature of biogeographic calibrations and the assumptions that they involve. We present an overview of the different geological and climatic events that can provide informative calibrations, and explain how such temporal information can be incorporated into dating analyses.
© 2015 The Author(s).

Keywords:  Bayesian phylogenetics; biogeography; calibration; divergence dating; molecular clock

Mesh:

Year:  2015        PMID: 26333662      PMCID: PMC4614420          DOI: 10.1098/rsbl.2015.0194

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  42 in total

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  21 in total

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