Literature DB >> 26324714

Structure of the Bacillus anthracis Sortase A Enzyme Bound to Its Sorting Signal: A FLEXIBLE AMINO-TERMINAL APPENDAGE MODULATES SUBSTRATE ACCESS.

Albert H Chan1, Sung Wook Yi2, Austen L Terwilliger3, Anthony W Maresso3, Michael E Jung2, Robert T Clubb4.   

Abstract

The endospore forming bacterium Bacillus anthracis causes lethal anthrax disease in humans and animals. The ability of this pathogen to replicate within macrophages is dependent upon the display of bacterial surface proteins attached to the cell wall by the B. anthracis Sortase A ((Ba)SrtA) enzyme. Previously, we discovered that the class A (Ba)SrtA sortase contains a unique N-terminal appendage that wraps around the body of the protein to contact the active site of the enzyme. To gain insight into its function, we determined the NMR structure of (Ba)SrtA bound to a LPXTG sorting signal analog. The structure, combined with dynamics, kinetics, and whole cell protein display data suggest that the N terminus modulates substrate access to the enzyme. We propose that it may increase the efficiency of protein display by reducing the unproductive hydrolytic cleavage of enzyme-protein covalent intermediates that form during the cell wall anchoring reaction. Notably, a key active site loop (β7/β8 loop) undergoes a disordered to ordered transition upon binding the sorting signal, potentially facilitating recognition of lipid II.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Bacillus anthracis; SrtA; enzyme mechanism; enzyme regulation; enzyme substrate complex; nuclear magnetic resonance (NMR); protein dynamic; protein structure; sortase A; transpeptidase

Mesh:

Substances:

Year:  2015        PMID: 26324714      PMCID: PMC4646193          DOI: 10.1074/jbc.M115.670984

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  61 in total

1.  Slow dynamics in folded and unfolded states of an SH3 domain.

Authors:  M Tollinger; N R Skrynnikov; F A Mulder; J D Forman-Kay; L E Kay
Journal:  J Am Chem Soc       Date:  2001-11-21       Impact factor: 15.419

Review 2.  Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules.

Authors:  A G Palmer; C D Kroenke; J P Loria
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

Review 3.  Dipolar couplings in macromolecular structure determination.

Authors:  A Bax; G Kontaxis; N Tjandra
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

4.  A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings.

Authors:  P Dosset; J C Hus; D Marion; M Blackledge
Journal:  J Biomol NMR       Date:  2001-07       Impact factor: 2.835

Review 5.  Recent advances towards new anti-infective agents that inhibit cell surface protein anchoring in Staphylococcus aureus and other gram-positive pathogens.

Authors:  N Suree; M E Jung; R T Clubb
Journal:  Mini Rev Med Chem       Date:  2007-10       Impact factor: 3.862

Review 6.  Architects at the bacterial surface - sortases and the assembly of pili with isopeptide bonds.

Authors:  Antoni P A Hendrickx; Jonathan M Budzik; So-Young Oh; Olaf Schneewind
Journal:  Nat Rev Microbiol       Date:  2011-03       Impact factor: 60.633

7.  The Sortase A enzyme that attaches proteins to the cell wall of Bacillus anthracis contains an unusual active site architecture.

Authors:  Ethan M Weiner; Scott Robson; Melanie Marohn; Robert T Clubb
Journal:  J Biol Chem       Date:  2010-05-19       Impact factor: 5.157

Review 8.  Anthrax.

Authors:  M Mock; A Fouet
Journal:  Annu Rev Microbiol       Date:  2001       Impact factor: 15.500

9.  Improved NMR spectra of a protein-DNA complex through rational mutagenesis and the application of a sensitivity optimized isotope-filtered NOESY experiment.

Authors:  J Iwahara; J M Wojciak; R T Clubb
Journal:  J Biomol NMR       Date:  2001-03       Impact factor: 2.835

10.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

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  10 in total

1.  Sortase-assembled pili in Corynebacterium diphtheriae are built using a latch mechanism.

Authors:  Scott A McConnell; Rachel A McAllister; Brendan R Amer; Brendan J Mahoney; Christopher K Sue; Chungyu Chang; Hung Ton-That; Robert T Clubb
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 11.205

2.  The "Lid" in the Streptococcus pneumoniae SrtC1 Sortase Adopts a Rigid Structure that Regulates Substrate Access to the Active Site.

Authors:  Alex W Jacobitz; Emmanuel B Naziga; Sung Wook Yi; Scott A McConnell; Robert Peterson; Michael E Jung; Robert T Clubb; Jeff Wereszczynski
Journal:  J Phys Chem B       Date:  2016-05-05       Impact factor: 2.991

3.  Functional analysis of Clostridium difficile sortase B reveals key residues for catalytic activity and substrate specificity.

Authors:  Chia-Yu Kang; I-Hsiu Huang; Chi-Chi Chou; Tsai-Yu Wu; Jyun-Cyuan Chang; Yu-Yuan Hsiao; Cheng-Hsuan Cheng; Wei-Jiun Tsai; Kai-Cheng Hsu; Shuying Wang
Journal:  J Biol Chem       Date:  2020-01-31       Impact factor: 5.157

Review 4.  Sortase Transpeptidases: Structural Biology and Catalytic Mechanism.

Authors:  Alex W Jacobitz; Michele D Kattke; Jeff Wereszczynski; Robert T Clubb
Journal:  Adv Protein Chem Struct Biol       Date:  2017-06-05       Impact factor: 3.507

5.  Structural and biochemical analyses of selectivity determinants in chimeric Streptococcus Class A sortase enzymes.

Authors:  Melody Gao; D Alex Johnson; Isabel M Piper; Hanna M Kodama; Justin E Svendsen; Elise Tahti; Frederick Longshore-Neate; Brandon Vogel; John M Antos; Jeanine F Amacher
Journal:  Protein Sci       Date:  2022-01-03       Impact factor: 6.725

6.  Kinetics and Optimization of the Lysine-Isopeptide Bond Forming Sortase Enzyme from Corynebacterium diphtheriae.

Authors:  Christopher K Sue; Scott A McConnell; Ken Ellis-Guardiola; John M Muroski; Rachel A McAllister; Justin Yu; Ana I Alvarez; Chungyu Chang; Rachel R Ogorzalek Loo; Joseph A Loo; Hung Ton-That; Robert T Clubb
Journal:  Bioconjug Chem       Date:  2020-05-27       Impact factor: 4.774

7.  Engineering the specificity of Streptococcus pyogenes sortase A by loop grafting.

Authors:  Magdalena Wójcik; Kamil Szala; Ronald van Merkerk; Wim J Quax; Ykelien L Boersma
Journal:  Proteins       Date:  2020-06-21

Review 8.  The Bacillus anthracis Cell Envelope: Composition, Physiological Role, and Clinical Relevance.

Authors:  Alice Chateau; Sander E Van der Verren; Han Remaut; Antonella Fioravanti
Journal:  Microorganisms       Date:  2020-11-26

9.  Interrogation of Bacillus anthracis SrtA active site loop forming open/close lid conformations through extensive MD simulations for understanding binding selectivity of SrtA inhibitors.

Authors:  Chandrabose Selvaraj; Gurudeeban Selvaraj; Randa Mohamed Ismail; Rajendran Vijayakumar; Alaa Baazeem; Dong-Qing Wei; Sanjeev Kumar Singh
Journal:  Saudi J Biol Sci       Date:  2021-05-08       Impact factor: 4.219

10.  Crystal Structure of the Streptomyces coelicolor Sortase E1 Transpeptidase Provides Insight into the Binding Mode of the Novel Class E Sorting Signal.

Authors:  Michele D Kattke; Albert H Chan; Andrew Duong; Danielle L Sexton; Michael R Sawaya; Duilio Cascio; Marie A Elliot; Robert T Clubb
Journal:  PLoS One       Date:  2016-12-09       Impact factor: 3.240

  10 in total

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