| Literature DB >> 26317342 |
Daniela P Leonardo1, Dulcinéia M Albuquerque1, Carolina Lanaro1, Letícia C Baptista1, José G Cecatti2, Fernanda G Surita2, Mary A Parpinelli2, Fernando F Costa1, Carla F Franco-Penteado1, Kleber Y Fertrin3, Maria Laura Costa2.
Abstract
BACKGROUND: Preeclampsia is one of the leading causes of maternal and neonatal morbidity and mortality in the world, but its appearance is still unpredictable and its pathophysiology has not been entirely elucidated. Genetic studies have associated single nucleotide polymorphisms in genes encoding nitric oxide synthase and matrix metalloproteases with preeclampsia, but the results are largely inconclusive across different populations.Entities:
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Year: 2015 PMID: 26317342 PMCID: PMC4552660 DOI: 10.1371/journal.pone.0136693
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Sequences of primers, annealing temperatures, and enzymes used in PCR-RFLPs and sizes of the fragments obtained.
| SNP | Primer sequences | Fragment size (bp) | Annealing temperature | Restriction enzyme | Fragments in wild-type homozygotes (bp) | Fragments in polymorphic homozygotes (bp) |
|---|---|---|---|---|---|---|
|
| F-5´-CTTCCTAGGCTGGTCCTTACTGA-3´ | 193 | 58°C |
| 186+7 | 162+24+7 |
| R-5´-CTGAGACCTGAAGAGCTAAAGAGC-3´ | ||||||
|
| F-5´-GCCTGGCACATAGTAGGCCC-3´ | 436 | 60°C |
| 381+48+7 | 246+135+48+7 |
| R-5´-CTTCCTAGCCAGCCGGCATC-3´ | ||||||
|
| F-5´-AAGGCAGGAGACAGTGGATGGA-3´ | 248 | 58°C |
| 248 | 158+90 |
| R-CCCAGTCAATCCCTTTGGTGCTCA-3´ | ||||||
|
| F-5´-CACCCAGGCCCACCCCAACT-3´ | 394 | 58°C |
| 394 | 352+42 |
| R-5´-GCCGCAGGTCGACAGAGAGACT-3´ | ||||||
|
| F-5´-CTTACTCTCCACTGCTTTTCAGAG-3´ (Martines | 394–448 | 58°C | NA | NA | NA |
| R-5´-CGCAGGTCAGCAGAGAGACTAG-3´ |
SNP, single nucleotide polymorphism; F, forward; R, reverse; bp, base pairs; VNTR, variable number of tandem repeats, NA, not applicable
Clinical characteristics of the study population.
| Controls (n = 266) | Cases (n = 77) |
| |
|---|---|---|---|
|
| 24,5 (24,8–28,0) | 26,4 (25,3–28,0) | 0.0547 |
|
| 64,0 (62,4–65,5) | 66,3 (63,0–69,6) | 0.2556 |
|
| 1,60 (1,60–1,62) | 1,61 (1,59–1,62) | 0.4529 |
|
| 24,6 (24,1–25,1) | 25,3 (24,0–26,6) | 0.1613 |
|
| 38,7 (38,4–39,0) | 35,2 (34,4–36,0) | <0.0001 |
|
| 3138 (3071–3205) | 2304 (2082–2525) | <0.0001 |
|
| 38,5 (38,2–38,8) | 35,3 (34,5–36,1) | <0.0001 |
|
| 25/258 (9.4) | 7/74 (9.1) | 0.4924 |
|
| 117/266 (44.4) | 38/77 (49.4) | 0.1764 |
|
| 15/265 (5.6) | 28/77 (35.6) | <0.0001 |
|
| |||
| Vaginal | 157 | 13 | |
| Forceps | 11 | 1 | <0.0001 |
| Cesarean section | 87 | 61 |
Major allele frequencies and Hardy-Weinberg tests for the study population.
| SNP | MAF | HWE |
|---|---|---|
|
| 0.861 | 0.65 |
|
| 0.907 | 0.51 |
|
| 0.747 | 0.77 |
|
| 0.705 | 0.60 |
|
| 0.805 | 0.59 |
SNP, single nucleotide polymorphism; MAF, major allele frequency; HWE, Hardy-Weinberg equilibrium
Genotype frequencies of SNPs for the study population.
| Wild-type homozygote | Heterozygote | Polymorphic homozygote | Not determined | |
|---|---|---|---|---|
|
|
|
|
|
|
| Cases | 42 (55%) | 25 (32%) | 10 (13%) | 0 (0%) |
| Controls | 149 (56%) | 101 (38%) | 13 (3%) | 3 (1%) |
|
|
|
|
|
|
| Cases | 36 (47%) | 29 (38%) | 12 (16%) | 0 (0%) |
| Controls | 131 (49%) | 118 (44%) | 15 (6%) | 2 (1%) |
|
|
|
|
|
|
| Cases | 53 (69%) | 23 (30%) | 1 (1%) | 0 (0%) |
| Controls | 196 (74%) | 61 (23%) | 4 (2%) | 5 (2%) |
|
|
|
|
|
|
| Cases | 60 (78%) | 11 (14%) | 1 (1%) | 5 (6%) |
| Controls | 217 (82%) | 43 (16%) | 3 (1%) | 3 (1%) |
ND, not determined
Genotype frequencies of NOS3 VNTR in intron 4 for the study population.
|
| 4/4 | 5/5 | 4/5 | 4/6 | 5/6 | ND |
|---|---|---|---|---|---|---|
| Cases | 0 (0%) | 52 (68%) | 17 (22%) | 1 (1%) | 0 (0%) | 7 (9%) |
| Controls | 13 (5%) | 148 (56%) | 78 (29%) | 2 (1%) | 4 (2%) | 21 (8%) |
VNTR, variable number of tandem repetitions; ND, not determined
Odds ratios for risk factors for preeclampsia.
| Risk factor | Odds ratio | 95% CI |
|---|---|---|
|
|
|
|
| Height (cm) | 0.98 | 0.94–1.02 |
| Weight (kg) | 1.00 | 1.00–1.00 |
| Smoking | 0.96 | 0.33–2.40 |
|
|
|
|
|
| 0.85 | 0.09–7.68 |
|
| 1.22 | 0.13–11.91 |
|
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|
|
|
|
|
|
CI, confidence interval; values in bold were statistically significant.
Fig 1Number of preeclamptic patients according to severity score and genotype distributions for NOS3 T-786C.