Literature DB >> 26317237

Removing roadblocks to deep sequencing of modified RNAs.

Jeremy E Wilusz1.   

Abstract

Entities:  

Mesh：

Substances：

Year:  2015        PMID： 26317237      PMCID： PMC4568847          DOI： 10.1038/nmeth.3516

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  10 in total

1.  Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells.

Authors:  Mariana Pavon-Eternod; Suzana Gomes; Marsha R Rosner; Tao Pan
Journal:  RNA       Date:  2013-02-19       Impact factor: 4.942

2.  A dual program for translation regulation in cellular proliferation and differentiation.

Authors:  Hila Gingold; Disa Tehler; Nanna R Christoffersen; Morten M Nielsen; Fazila Asmar; Susanne M Kooistra; Nicolaj S Christophersen; Lise Lotte Christensen; Michael Borre; Karina D Sørensen; Lars D Andersen; Claus L Andersen; Esther Hulleman; Tom Wurdinger; Elisabeth Ralfkiær; Kristian Helin; Kirsten Grønbæk; Torben Ørntoft; Sebastian M Waszak; Orna Dahan; Jakob Skou Pedersen; Anders H Lund; Yitzhak Pilpel
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

Review 3.  Controlling translation via modulation of tRNA levels.

Authors:  Jeremy E Wilusz
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-04-28       Impact factor: 9.957

4.  Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors:  Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

Review 5.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

Review 6.  tRNA fragments in human health and disease.

Authors:  Paul Anderson; Pavel Ivanov
Journal:  FEBS Lett       Date:  2014-09-16       Impact factor: 4.124

7.  Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.

Authors:  Sabine Mohr; Eman Ghanem; Whitney Smith; Dennis Sheeter; Yidan Qin; Olga King; Damon Polioudakis; Vishwanath R Iyer; Scott Hunicke-Smith; Sajani Swamy; Scott Kuersten; Alan M Lambowitz
Journal:  RNA       Date:  2013-05-22       Impact factor: 4.942

8.  MODOMICS: a database of RNA modification pathways--2013 update.

Authors:  Magdalena A Machnicka; Kaja Milanowska; Okan Osman Oglou; Elzbieta Purta; Malgorzata Kurkowska; Anna Olchowik; Witold Januszewski; Sebastian Kalinowski; Stanislaw Dunin-Horkawicz; Kristian M Rother; Mark Helm; Janusz M Bujnicki; Henri Grosjean
Journal:  Nucleic Acids Res       Date:  2012-10-30       Impact factor: 16.971

9.  ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments.

Authors:  Aaron E Cozen; Erin Quartley; Andrew D Holmes; Eva Hrabeta-Robinson; Eric M Phizicky; Todd M Lowe
Journal:  Nat Methods       Date:  2015-08-03       Impact factor: 28.547

10.  Efficient and quantitative high-throughput tRNA sequencing.

Authors:  Guanqun Zheng; Yidan Qin; Wesley C Clark; Qing Dai; Chengqi Yi; Chuan He; Alan M Lambowitz; Tao Pan
Journal:  Nat Methods       Date:  2015-07-27       Impact factor: 28.547
  10 in total
  17 in total

1.  Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification.

Authors:  Jessica M Warren; Thalia Salinas-Giegé; Guillaume Hummel; Nicole L Coots; Joshua M Svendsen; Kristen C Brown; Laurence Drouard; Daniel B Sloan
Journal:  RNA Biol       Date:  2020-07-25       Impact factor: 4.652

2.  LOTTE-seq (Long hairpin oligonucleotide based tRNA high-throughput sequencing): specific selection of tRNAs with 3'-CCA end for high-throughput sequencing.

Authors:  Lieselotte Erber; Anne Hoffmann; Jörg Fallmann; Heike Betat; Peter F Stadler; Mario Mörl
Journal:  RNA Biol       Date:  2019-09-16       Impact factor: 4.652

3.  RNA-Seq employing a novel rRNA depletion strategy reveals a rich repertoire of snoRNAs in Euglena gracilis including box C/D and Ψ-guide RNAs targeting the modification of rRNA extremities.

Authors:  Ashley N Moore; David C McWatters; Andrew J Hudson; Anthony G Russell
Journal:  RNA Biol       Date:  2018-10-09       Impact factor: 4.652

4.  Pancreatic β-cell tRNA hypomethylation and fragmentation link TRMT10A deficiency with diabetes.

Authors:  Cristina Cosentino; Sanna Toivonen; Esteban Diaz Villamil; Mohamed Atta; Jean-Luc Ravanat; Stéphane Demine; Andrea Alex Schiavo; Nathalie Pachera; Jean-Philippe Deglasse; Jean-Christophe Jonas; Diego Balboa; Timo Otonkoski; Ewan R Pearson; Piero Marchetti; Décio L Eizirik; Miriam Cnop; Mariana Igoillo-Esteve
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

5.  Desumoylation of RNA polymerase III lies at the core of the Sumo stress response in yeast.

Authors:  Aurélie Nguéa P; Joseph Robertson; Maria Carmen Herrera; Pierre Chymkowitch; Jorrit M Enserink
Journal:  J Biol Chem       Date:  2019-11-01       Impact factor: 5.157

Review 6.  Applying genomic and transcriptomic advances to mitochondrial medicine.

Authors:  William L Macken; Jana Vandrovcova; Michael G Hanna; Robert D S Pitceathly
Journal:  Nat Rev Neurol       Date:  2021-02-23       Impact factor: 42.937

Review 7.  Deciphering RNA modifications at base resolution: from chemistry to biology.

Authors:  Turja K Debnath; Blerta Xhemalçe
Journal:  Brief Funct Genomics       Date:  2021-03-27       Impact factor: 4.241

8.  Genome-wide profiling of transfer RNAs and their role as novel prognostic markers for breast cancer.

Authors:  Preethi Krishnan; Sunita Ghosh; Bo Wang; Mieke Heyns; Dongping Li; John R Mackey; Olga Kovalchuk; Sambasivarao Damaraju
Journal:  Sci Rep       Date:  2016-09-08       Impact factor: 4.379

Review 9.  Who Watches the Watchmen: Roles of RNA Modifications in the RNA Interference Pathway.

Authors:  Samantha B Shelton; Calder Reinsborough; Blerta Xhemalce
Journal:  PLoS Genet       Date:  2016-07-21       Impact factor: 5.917

10.  Human angiogenin is a potent cytotoxin in the absence of ribonuclease inhibitor.

Authors:  Sydney P Thomas; Trish T Hoang; Valerie T Ressler; Ronald T Raines
Journal:  RNA       Date:  2018-05-10       Impact factor: 4.942
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.