Literature DB >> 26315440

SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium.

Ye Chen1, Jae Kyoung Kim2, Andrew J Hirning1, Krešimir Josić3, Matthew R Bennett4.   

Abstract

A challenge of synthetic biology is the creation of cooperative microbial systems that exhibit population-level behaviors. Such systems use cellular signaling mechanisms to regulate gene expression across multiple cell types. We describe the construction of a synthetic microbial consortium consisting of two distinct cell types—an "activator" strain and a "repressor" strain. These strains produced two orthogonal cell-signaling molecules that regulate gene expression within a synthetic circuit spanning both strains. The two strains generated emergent, population-level oscillations only when cultured together. Certain network topologies of the two-strain circuit were better at maintaining robust oscillations than others. The ability to program population-level dynamics through the genetic engineering of multiple cooperative strains points the way toward engineering complex synthetic tissues and organs with multiple cell types.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 26315440      PMCID: PMC4597888          DOI: 10.1126/science.aaa3794

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  52 in total

1.  Tunable oscillations and chaotic dynamics in systems with localized synthesis.

Authors:  Faisal Naqib; Thomas Quail; Louai Musa; Horia Vulpe; Jay Nadeau; Jinzhi Lei; Leon Glass
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-04-16

2.  Delayed protein synthesis reduces the correlation between mRNA and protein fluctuations.

Authors:  Tomáš Gedeon; Pavol Bokes
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

3.  Precise and reliable gene expression via standard transcription and translation initiation elements.

Authors:  Vivek K Mutalik; Joao C Guimaraes; Guillaume Cambray; Colin Lam; Marc Juul Christoffersen; Quynh-Anh Mai; Andrew B Tran; Morgan Paull; Jay D Keasling; Adam P Arkin; Drew Endy
Journal:  Nat Methods       Date:  2013-03-10       Impact factor: 28.547

Review 4.  Modeling synthetic gene oscillators.

Authors:  Erin L O'Brien; Elizabeth Van Itallie; Matthew R Bennett
Journal:  Math Biosci       Date:  2012-01-18       Impact factor: 2.144

5.  Microfluidics for synthetic biology: from design to execution.

Authors:  M S Ferry; I A Razinkov; J Hasty
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

6.  Engineered temperature compensation in a synthetic genetic clock.

Authors:  Faiza Hussain; Chinmaya Gupta; Andrew J Hirning; William Ott; Kathleen S Matthews; Kresimir Josic; Matthew R Bennett
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

7.  Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'.

Authors:  Alvin Tamsir; Jeffrey J Tabor; Christopher A Voigt
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

8.  Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling.

Authors:  Nicholas Marchand; Cynthia H Collins
Journal:  Biotechnol Bioeng       Date:  2013-07-05       Impact factor: 4.530

9.  Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β.

Authors:  Han Cho; Xuan Zhao; Megumi Hatori; Ruth T Yu; Grant D Barish; Michael T Lam; Ling-Wa Chong; Luciano DiTacchio; Annette R Atkins; Christopher K Glass; Christopher Liddle; Johan Auwerx; Michael Downes; Satchidananda Panda; Ronald M Evans
Journal:  Nature       Date:  2012-03-29       Impact factor: 49.962

10.  A mechanism for robust circadian timekeeping via stoichiometric balance.

Authors:  Jae Kyoung Kim; Daniel B Forger
Journal:  Mol Syst Biol       Date:  2012       Impact factor: 11.429

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  78 in total

1.  Bistability and oscillations in co-repressive synthetic microbial consortia.

Authors:  Mehdi Sadeghpour; Alan Veliz-Cuba; Gábor Orosz; Krešimir Josić; Matthew R Bennett
Journal:  Quant Biol       Date:  2017-03-30

2.  Spatiotemporal Dynamics of Synthetic Microbial Consortia in Microfluidic Devices.

Authors:  Razan N Alnahhas; James J Winkle; Andrew J Hirning; Bhargav Karamched; William Ott; Krešimir Josić; Matthew R Bennett
Journal:  ACS Synth Biol       Date:  2019-08-09       Impact factor: 5.110

3.  Bayesian inference of distributed time delay in transcriptional and translational regulation.

Authors:  Boseung Choi; Yu-Yu Cheng; Selahattin Cinar; William Ott; Matthew R Bennett; Krešimir Josić; Jae Kyoung Kim
Journal:  Bioinformatics       Date:  2020-01-15       Impact factor: 6.937

4.  Elements of biological oscillations in time and space.

Authors:  Yangxiaolu Cao; Allison Lopatkin; Lingchong You
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

5.  Role of quorum sensing and chemical communication in fungal biotechnology and pathogenesis.

Authors:  Jorge Barriuso; Deborah A Hogan; Tajalli Keshavarz; María Jesús Martínez
Journal:  FEMS Microbiol Rev       Date:  2018-09-01       Impact factor: 16.408

6.  Incoherent Inputs Enhance the Robustness of Biological Oscillators.

Authors:  Zhengda Li; Shixuan Liu; Qiong Yang
Journal:  Cell Syst       Date:  2017-07-26       Impact factor: 10.304

7.  Evolution-guided engineering of small-molecule biosensors.

Authors:  Tim Snoek; Evan K Chaberski; Francesca Ambri; Stefan Kol; Sara P Bjørn; Bo Pang; Jesus F Barajas; Ditte H Welner; Michael K Jensen; Jay D Keasling
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

8.  Design of Adjacent Transcriptional Regions to Tune Gene Expression and Facilitate Circuit Construction.

Authors:  Fuqing Wu; Qi Zhang; Xiao Wang
Journal:  Cell Syst       Date:  2018-02-07       Impact factor: 10.304

Review 9.  Synthetic Morphogenesis.

Authors:  Brian P Teague; Patrick Guye; Ron Weiss
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

Review 10.  Building Spatial Synthetic Biology with Compartments, Scaffolds, and Communities.

Authors:  Jessica K Polka; Stephanie G Hays; Pamela A Silver
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-08-01       Impact factor: 10.005

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