Literature DB >> 22266166

Modeling synthetic gene oscillators.

Erin L O'Brien1, Elizabeth Van Itallie, Matthew R Bennett.   

Abstract

Genetic oscillators have long held the fascination of experimental and theoretical synthetic biologists alike. From an experimental standpoint, the creation of synthetic gene oscillators represents a yardstick by which our ability to engineer synthetic gene circuits can be measured. For theorists, synthetic gene oscillators are a playground in which to test mathematical models for the dynamics of gene regulation. Historically, mathematical models of synthetic gene circuits have varied greatly. Often, the differences are determined by the level of biological detail included within each model, or which approximation scheme is used. In this review, we examine, in detail, how mathematical models of synthetic gene oscillators are derived and the biological processes that affect the dynamics of gene regulation. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22266166     DOI: 10.1016/j.mbs.2012.01.001

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  17 in total

1.  SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium.

Authors:  Ye Chen; Jae Kyoung Kim; Andrew J Hirning; Krešimir Josić; Matthew R Bennett
Journal:  Science       Date:  2015-08-28       Impact factor: 47.728

2.  The effects of time-varying temperature on delays in genetic networks.

Authors:  Marcella M Gomez; Richard M Murray; Matthew R Bennett
Journal:  SIAM J Appl Dyn Syst       Date:  2016-09-15       Impact factor: 2.316

3.  The Timing of Transcriptional Regulation in Synthetic Gene Circuits.

Authors:  Yu-Yu Cheng; Andrew J Hirning; Krešimir Josić; Matthew R Bennett
Journal:  ACS Synth Biol       Date:  2017-09-05       Impact factor: 5.110

4.  Effects of cell cycle noise on excitable gene circuits.

Authors:  Alan Veliz-Cuba; Chinmaya Gupta; Matthew R Bennett; Krešimir Josić; William Ott
Journal:  Phys Biol       Date:  2016-11-30       Impact factor: 2.583

5.  Model-Based Investigation of the Relationship between Regulation Level and Pulse Property of I1-FFL Gene Circuits.

Authors:  Jordan Ryan; Seongho Hong; Mathias Foo; Jongmin Kim; Xun Tang
Journal:  ACS Synth Biol       Date:  2022-06-21       Impact factor: 5.249

6.  Spatiotemporal dynamics of distributed synthetic genetic circuits.

Authors:  Oleg Kanakov; Tetyana Laptyeva; Lev Tsimring; Mikhail Ivanchenko
Journal:  Physica D       Date:  2016-04-01       Impact factor: 2.300

7.  Delay decomposition approach to [Formula: see text] filtering analysis of genetic oscillator networks with time-varying delays.

Authors:  V M Revathi; P Balasubramaniam
Journal:  Cogn Neurodyn       Date:  2016-01-08       Impact factor: 5.082

Review 8.  Protein sequestration versus Hill-type repression in circadian clock models.

Authors:  Jae Kyoung Kim
Journal:  IET Syst Biol       Date:  2016-08       Impact factor: 1.615

9.  Design of synthetic genetic oscillators using evolutionary optimization.

Authors:  Yen-Chang Chang; Chun-Liang Lin; Tanagorn Jennawasin
Journal:  Evol Bioinform Online       Date:  2013-03-10       Impact factor: 1.625

10.  Synthesizing genetic sequential logic circuit with clock pulse generator.

Authors:  Chia-Hua Chuang; Chun-Liang Lin
Journal:  BMC Syst Biol       Date:  2014-05-28
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