Literature DB >> 26315429

FUNGAL BIOGEOGRAPHY. Response to Comment on "Global diversity and geography of soil fungi".

Leho Tedersoo1, Mohammad Bahram2, Sergei Põlme3, Sten Anslan4, Taavi Riit4, Urmas Kõljalg4, R Henrik Nilsson5, Falk Hildebrand6, Kessy Abarenkov3.   

Abstract

Schadt and Rosling (Technical Comment, 26 June 2015, p. 1438) argue that primer-template mismatches neglected the fungal class Archaeorhizomycetes in a global soil survey. Amplicon-based metabarcoding of nine barcode-primer pair combinations and polymerase chain reaction (PCR)-free shotgun metagenomics revealed that barcode and primer choice and PCR bias drive the diversity and composition of microorganisms in general, but the Archaeorhizomycetes were little affected in the global study. We urge that careful choice of DNA markers and primers is essential for ecological studies using high-throughput sequencing for identification.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID： 26315429     DOI： 10.1126/science.aaa5594

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  12 in total

1.  DNA metabarcoding of the leachate microbiota from sanitary landfill: potential for bioremediation process.

Authors:  Michel Rodrigo Zambrano Passarini; João Victor Fonseca Moreira; Jose Alejandro Morales Gomez; Rafaella Costa Bonugli-Santos
Journal:  Arch Microbiol       Date:  2021-07-06       Impact factor: 2.552

2.  Arbuscular Mycorrhizal Tree Communities Have Greater Soil Fungal Diversity and Relative Abundances of Saprotrophs and Pathogens than Ectomycorrhizal Tree Communities.

Authors:  Andrew C Eagar; Ryan M Mushinski; Amber L Horning; Kurt A Smemo; Richard P Phillips; Christopher B Blackwood
Journal:  Appl Environ Microbiol       Date:  2021-10-20       Impact factor: 5.005

3.  Nitrogen and phosphorus fertilization consistently favor pathogenic over mutualistic fungi in grassland soils.

Authors:  Ylva Lekberg; Carlos A Arnillas; Elizabeth T Borer; Lorinda S Bullington; Noah Fierer; Peter G Kennedy; Jonathan W Leff; Angela D Luis; Eric W Seabloom; Jeremiah A Henning
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

4.  New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA.

Authors:  Asma Asemaninejad; Nimalka Weerasuriya; Gregory B Gloor; Zoë Lindo; R Greg Thorn
Journal:  PLoS One       Date:  2016-07-08       Impact factor: 3.240

5.  Multi-targeted metagenetic analysis of the influence of climate and environmental parameters on soil microbial communities along an elevational gradient.

Authors:  Anders Lanzén; Lur Epelde; Fernando Blanco; Iker Martín; Unai Artetxe; Carlos Garbisu
Journal:  Sci Rep       Date:  2016-06-20       Impact factor: 4.379

6.  Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes.

Authors:  Michal Choma; Jiří Bárta; Hana Šantrůčková; Tim Urich
Journal:  Sci Rep       Date:  2016-12-23       Impact factor: 4.379

7.  The Community Structures of Prokaryotes and Fungi in Mountain Pasture Soils are Highly Correlated and Primarily Influenced by pH.

Authors:  Anders Lanzén; Lur Epelde; Carlos Garbisu; Mikel Anza; Iker Martín-Sánchez; Fernando Blanco; Iker Mijangos
Journal:  Front Microbiol       Date:  2015-11-27       Impact factor: 5.640

Review 8.  From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes.

Authors:  Clémence Frioux; Dipali Singh; Tamas Korcsmaros; Falk Hildebrand
Journal:  Comput Struct Biotechnol J       Date:  2020-06-25       Impact factor: 7.271

Review 9.  High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations.

Authors:  Leho Tedersoo; Rein Drenkhan; Sten Anslan; Carmen Morales-Rodriguez; Michelle Cleary
Journal:  Mol Ecol Resour       Date:  2018-12-04       Impact factor: 7.090

10.  Effects of rhizosphere fungi on the chemical composition of fruits of the medicinal plant Cinnamomum migao endemic to southwestern China.

Authors:  Jingzhong Chen; Xiaolong Huang; Bingli Tong; Deng Wang; Jiming Liu; Xiaofeng Liao; Qingwen Sun
Journal:  BMC Microbiol       Date:  2021-07-06       Impact factor: 3.605
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