Literature DB >> 2630803

Metabolic dynamics in the human red cell. Part I--A comprehensive kinetic model.

A Joshi1, B O Palsson.   

Abstract

The experimental investigation of the red cell over the last three decades has accumulated extensive biochemical data on its enzymes and metabolites. The goal of this work is to provide a unified theoretical framework for the integration and consistent interpretation of these data by means of a comprehensive mathematical metabolic model of the red cell. This model is described in four parts. Here, we describe the general conception, scope and the biological assumptions of the model. The model is comprised of dynamic mass balances based on stoichiometry and enzyme kinetics with the imposed physico-chemical constraints of osmotic balance and electroneutrality.

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Year:  1989        PMID: 2630803     DOI: 10.1016/s0022-5193(89)80233-4

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  33 in total

Review 1.  Using the reconstructed genome-scale human metabolic network to study physiology and pathology.

Authors:  A Bordbar; B O Palsson
Journal:  J Intern Med       Date:  2012-02       Impact factor: 8.989

2.  Effect of haemodialysate and its peptide fractions on lactate dehydrogenase activity in erythrocytes from healthy subjects and patients with end-stage renal disease.

Authors:  O Smoleński; Z Tabarowski; H Miszta; Z Dabrowski
Journal:  Int Urol Nephrol       Date:  1992       Impact factor: 2.370

3.  Description and analysis of metabolic connectivity and dynamics in the human red blood cell.

Authors:  Kenneth J Kauffman; John David Pajerowski; Neema Jamshidi; Bernhard O Palsson; Jeremy S Edwards
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

4.  Extreme pathway analysis of human red blood cell metabolism.

Authors:  Sharon J Wiback; Bernhard O Palsson
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

Review 5.  The computational integrated myocyte: a view into the virtual heart.

Authors:  James B Bassingthwaighte; Kalyan C Vinnakota
Journal:  Ann N Y Acad Sci       Date:  2004-05       Impact factor: 5.691

6.  Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models.

Authors:  Neema Jamshidi; Bernhard Ø Palsson
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

7.  iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states.

Authors:  Aarash Bordbar; Neema Jamshidi; Bernhard O Palsson
Journal:  BMC Syst Biol       Date:  2011-07-12

8.  A metabolic model of human erythrocytes: practical application of the E-Cell Simulation Environment.

Authors:  Ayako Yachie-Kinoshita; Taiko Nishino; Hanae Shimo; Makoto Suematsu; Masaru Tomita
Journal:  J Biomed Biotechnol       Date:  2010-06-28

9.  Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network.

Authors:  Germán Plata; Tzu-Lin Hsiao; Kellen L Olszewski; Manuel Llinás; Dennis Vitkup
Journal:  Mol Syst Biol       Date:  2010-09-07       Impact factor: 11.429

10.  Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates.

Authors:  A Varma; B W Boesch; B O Palsson
Journal:  Appl Environ Microbiol       Date:  1993-08       Impact factor: 4.792

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