Literature DB >> 26290999

Modeling the Ion Selectivity of the Phosphate Specific Channel OprP.

Niraj Modi1, Roland Benz1, Robert E W Hancock2, Ulrich Kleinekathöfer1.   

Abstract

Ion selectivity of transport systems is an essential property of membranes from living organisms. These entities are used to regulate multifarious biological processes by virtue of selective participation of specific ions in transport processes. To understand this process, we studied the phosphate selectivity of the OprP porin from Pseudomonas aeruginosa using all-atom free-energy molecular dynamics simulations. These calculations were performed to define the energetics of phosphate, sulfate, chloride, and potassium ion transport through OprP. Atomic-level analysis revealed that the overall electrostatic environment of the channel was responsible for the anion selectivity of the channel, whereas the particular balance of interactions between the permeating ions and water as well as channel residues drove the selectivity between different anions. The selectivity of OprP is discussed in light of well-studied ion channels that are highly selective for potassium or chloride.

Entities:  

Keywords:  OprP; Pseudomonas aeruginosa; anion transport; molecular dynamics simulation; phosphate selectivity

Year:  2012        PMID: 26290999     DOI: 10.1021/jz301637d

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  8 in total

1.  Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa.

Authors:  Niraj Modi; Sonalli Ganguly; Iván Bárcena-Uribarri; Roland Benz; Bert van den Berg; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2015-10-06       Impact factor: 4.033

2.  Computational and Experimental Studies of Inhibitor Design for Aldolase A.

Authors:  Rui Qi; Brandon Walker; Zhifeng Jing; Maiya Yu; Gabriel Stancu; Ramakrishna Edupuganti; Kevin N Dalby; Pengyu Ren
Journal:  J Phys Chem B       Date:  2019-07-03       Impact factor: 2.991

3.  Elucidating the Phosphate Binding Mode of Phosphate-Binding Protein: The Critical Effect of Buffer Solution.

Authors:  Rui Qi; Zhifeng Jing; Chengwen Liu; Jean-Philip Piquemal; Kevin N Dalby; Pengyu Ren
Journal:  J Phys Chem B       Date:  2018-06-11       Impact factor: 2.991

4.  Fosfomycin Permeation through the Outer Membrane Porin OmpF.

Authors:  Vinaya Kumar Golla; Eulàlia Sans-Serramitjana; Karunakar Reddy Pothula; Lorraine Benier; Jayesh Arun Bafna; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2018-12-08       Impact factor: 4.033

5.  Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example.

Authors:  Satya Prathyusha Bhamidimarri; Jigneshkumar Dahyabhai Prajapati; Bert van den Berg; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

Review 6.  Exploring bacterial outer membrane barrier to combat bad bugs.

Authors:  Ishan Ghai; Shashank Ghai
Journal:  Infect Drug Resist       Date:  2017-08-30       Impact factor: 4.003

7.  Understanding Voltage Gating of Providencia stuartii Porins at Atomic Level.

Authors:  Wanling Song; Harsha Bajaj; Chady Nasrallah; Hualiang Jiang; Mathias Winterhalter; Jacques-Philippe Colletier; Yechun Xu
Journal:  PLoS Comput Biol       Date:  2015-05-08       Impact factor: 4.475

Review 8.  Understanding antibiotic resistance via outer membrane permeability.

Authors:  Ishan Ghai; Shashank Ghai
Journal:  Infect Drug Resist       Date:  2018-04-11       Impact factor: 4.003

  8 in total

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