Literature DB >> 26285736

Structural and Entropic Allosteric Signal Transduction Strength via Correlated Motions.

Dong Long1, Rafael Brüschweiler1.   

Abstract

Allosteric signal transduction in biomacromolecules can play an essential role in their function. Internal motional correlations in proteins provide a possible communication mechanism, but the quantitative relationship between statistical correlations and allostery is unknown. Quantitative relationships between internal motional correlations and the efficiency of propagation of allosteric structural and entropic effects are introduced and validated against conformational ensembles obtained from molecular dynamics simulations. This framework can explain a range of phenomena, such as the occurrence of an allosteric entropy change in the absence of any noticeable structural change.

Keywords:  allostery; motional correlations; population shift; protein dynamics; signal transduction

Year:  2012        PMID: 26285736     DOI: 10.1021/jz300488e

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  9 in total

1.  Thrombomodulin Binding Selects the Catalytically Active Form of Thrombin.

Authors:  Lindsey D Handley; Nicholas A Treuheit; Varun J Venkatesh; Elizabeth A Komives
Journal:  Biochemistry       Date:  2015-10-26       Impact factor: 3.162

2.  Evolutionary conservation of the allosteric activation of factor VIIa by tissue factor in lamprey.

Authors:  D L Beeler; W C Aird; M A Grant
Journal:  J Thromb Haemost       Date:  2018-03-12       Impact factor: 5.824

3.  Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities.

Authors:  Paul M Gasper; Brian Fuglestad; Elizabeth A Komives; Phineus R L Markwick; J Andrew McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-28       Impact factor: 11.205

Review 4.  Exploring the role of receptor flexibility in structure-based drug discovery.

Authors:  Ferran Feixas; Steffen Lindert; William Sinko; J Andrew McCammon
Journal:  Biophys Chem       Date:  2013-11-09       Impact factor: 2.352

5.  Molecular dynamics study of naturally existing cavity couplings in proteins.

Authors:  Montserrat Barbany; Tim Meyer; Adam Hospital; Ignacio Faustino; Marco D'Abramo; Jordi Morata; Modesto Orozco; Xavier de la Cruz
Journal:  PLoS One       Date:  2015-03-27       Impact factor: 3.240

6.  Nonlinear backbone torsional pair correlations in proteins.

Authors:  Shiyang Long; Pu Tian
Journal:  Sci Rep       Date:  2016-10-06       Impact factor: 4.379

7.  Spatio-temporal coordination among functional residues in protein.

Authors:  Sutapa Dutta; Mahua Ghosh; J Chakrabarti
Journal:  Sci Rep       Date:  2017-01-16       Impact factor: 4.379

8.  Significance of triple torsional correlations in proteins.

Authors:  Shiyang Long; Jianwei Wang; Pu Tian
Journal:  RSC Adv       Date:  2019-05-07       Impact factor: 4.036

9.  Weighted Implementation of Suboptimal Paths (WISP): An Optimized Algorithm and Tool for Dynamical Network Analysis.

Authors:  Adam T Van Wart; Jacob Durrant; Lane Votapka; Rommie E Amaro
Journal:  J Chem Theory Comput       Date:  2014-01-14       Impact factor: 6.006

  9 in total

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