| Literature DB >> 26284230 |
Arvind Ramanathan1, Laura L Pullum1, Tanner C Hobson2, Christopher G Stahl2, Chad A Steed2, Shannon P Quinn3, Chakra S Chennubhotla3, Silvia Valkova4.
Abstract
We describe a data-driven unsupervised machine learning approach to extract geo-temporal co-occurrence patterns of asthma and the flu from large-scale electronic healthcare reimbursement claims (eHRC) datasets. Specifically, we examine the eHRC data from 2009 to 2010 pandemic H1N1 influenza season and analyze whether different geographic regions within the United States (US) showed an increase in co-occurrence patterns of the flu and asthma. Our analyses reveal that the temporal patterns extracted from the eHRC data show a distinct lag time between the peak incidence of the asthma and the flu. While the increased occurrence of asthma contributed to increased flu incidence during the pandemic, this co-occurrence is predominant for female patients. The geo-temporal patterns reveal that the co-occurrence of the flu and asthma are typically concentrated within the south-east US. Further, in agreement with previous studies, large urban areas (such as New York, Miami, and Los Angeles) exhibit co-occurrence patterns that suggest a peak incidence of asthma and flu significantly early in the spring and winter seasons. Together, our data-analytic approach, integrated within the Oak Ridge Bio-surveillance Toolkit platform, demonstrates how eHRC data can provide novel insights into co-occurring disease patterns.Entities:
Keywords: asthma; disease co-occurrence; electronic healthcare reimbursement claims; flu; non-negative matrix factorization; public health surveillance
Year: 2015 PMID: 26284230 PMCID: PMC4522606 DOI: 10.3389/fpubh.2015.00182
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Figure 1Summary of temporal trends observed from the flu (black line) and asthma (green line) case counts indicate a distinct delay in the peak incidence of flu compared to asthma. Note that we have reported the data using a moving average window of 7 days (to overcome gaps in the IMS ambulatory care reimbursement claims data based on reports received throughout the week) and normalized the results based on the fraction of total case counts received at every zip code. Dotted lines are used to the respective peak incidence rates of asthma (green) and flu (black). Note that in both the spring season (April–May 2009) and the fall season (September–October 2009), the asthma incidence (indicated by A and A, respectively) peaks before the peak in flu incidence (indicated by F and F, respectively). Only for the winter season, the peaks in asthma and flu incidence rates coincide (highlighted by A and F respectively).
Demographic summary of H1N1 and asthma case count summary observed from eHRC data.
| Child attributes | Flu | Asthma | Flu and asthma |
|---|---|---|---|
| Mean age | 7 | 7 | |
| <1 year | 109586 | 171117 | 6972 |
| 1–2 years | 279806 | 663782 | 27206 |
| 3–5 years | 466094 | 1109834 | 51155 |
| >5 years | 1241575 | 2870801 | 118951 |
| Total | 2097061 | 4815534 | 204284 |
| No. (%) of girls | 48 | 47 | 92 |
| Mean age | 42 | 51 | |
| 18–24 years | 226075 | 616275 | 12543 |
| 25–30 years | 181821 | 536832 | 8962 |
| 31–35 years | 138167 | 530525 | 7565 |
| 36–40 years | 144418 | 648801 | 8543 |
| 41–45 years | 133488 | 741015 | 8762 |
| 46–50 years | 131245 | 856720 | 9093 |
| >50 years | 393298 | 4080939 | 25450 |
| Total | 1348512 | 8011107 | 80918 |
| No. (%) of females | 60 | 69 | 70 |
Figure 2NMF captures temporal patterns (H) in both (A) asthma (indicated by H. The superscript indicates the respective subspace s from NMF that we are depicting. Note that the flu incidence rates have a distinct shift toward the spring/summer seasons (as indicated by the peak incidence rates in each of the patterns , shown by a red dotted line and an arrow). While and indicate a sustained occurrence of asthma in the spring/summer and fall/winter seasons respectively, and indicate peak incidence of asthma preceding the flu incidence (corresponding to ). Further, the earlier onset of the flu observed in during the summer of 2009 is also preceded by a distinct peak in the asthma incidence observed in .
Figure 3Spatial patterns from NMF indicate distinct pockets of urban areas showing co-occurrence of flu and asthma. A geographic incidence map of the flu () and asthma () shows the common areas of co-occurrence as described in our analysis of the diagnostic data. The spatial incidence is summarized in increasing color intensity shown on the color map. It is interesting to observe that the flu incidence gradually progresses to the south-east from through . Further, almost exclusively describes the occurrence of the flu in only large urban areas of the country. Similar patterns are also observed in the asthma incidence with local incidences being concentrated around urban areas.