Literature DB >> 26279943

Crystal structure of 3-bromo-2-hy-droxy-benzo-nitrile.

Sean R Dickinson1, Peter Müller2, Joseph M Tanski1.   

Abstract

The crystal structure of the title compound, C7H4BrNO, has been determined, revealing a partial mol-ecular packing disorder such that a 180° rotation of the mol-ecule about the phenol C-O bond results in disorder of the bromine and nitrile groups. The disorder has been parameterized as a disorder of only the bromine and nitrile substituents on a unique phenol ring. An intra-molecular O-H⋯Br contact occurs. In the crystal, O-H⋯Br/O-H⋯Nnitrile hydrogen bonding is present between the disordered bromine and nitrile substituents and the phenol group, forming a spiral chain about a twofold screw axis extending parallel to the b-axis direction. Within this spiral chain, the mol-ecules also inter-act, forming offset face-to-face π-stacking inter-actions with plane-to-centroid distance of 3.487 (1) Å.

Entities:  

Keywords:  crystal structure; disorder; hydrogen bonding; π-stacking

Year:  2015        PMID: 26279943      PMCID: PMC4518954          DOI: 10.1107/S2056989015011974

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For syntheses of the title compound, see: Anwar & Hansen (2008 ▸); Nakai et al. (2014 ▸); Whiting et al. (2015 ▸). For its use as a synthetic reagent, see: Li & Chua (2011 ▸); Mulzer & Coates (2011 ▸). For related crystal structures, see: Beswick et al. (1996 ▸); Oh & Tanski (2012 ▸). For information on π-stacking, see: Hunter & Sanders (1990 ▸); Lueckheide et al. (2013 ▸). For information on the refinement of disordered crystal structures, see: Müller (2009 ▸); Thorn et al. (2012 ▸).

Experimental

Crystal data

C7H4BrNO M = 198.02 Monoclinic, a = 13.0171 (7) Å b = 3.8488 (2) Å c = 13.5989 (7) Å β = 96.062 (1)° V = 677.50 (6) Å3 Z = 4 Mo Kα radiation μ = 5.98 mm−1 T = 125 K 0.22 × 0.10 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▸) T min = 0.57, T max = 0.80 9903 measured reflections 1977 independent reflections 1776 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.049 S = 1.08 1977 reflections 110 parameters 102 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.45 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL2014; software used to prepare material for publication: SHELXTL2014, OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015011974/ld2134sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015011974/ld2134Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011974/ld2134Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015011974/ld2134fig1.tif A view of the title compound showing the disordered nitrile and bromine substituents, with displacement ellipsoids shown at the 50% probability level. Click here for additional data file. O H O H nitrile . DOI: 10.1107/S2056989015011974/ld2134fig2.tif A view of the inter­molecular O—H⋯Br/O—H⋯Nnitrile hydrogen bonding inter­actions (dashed lines) forming a helical one-dimensional chain, with displacement ellipsoids shown at the 50% probability level. See Table 1 for symmetry code (i). A thin solid line indicates an intra­molecular O—H⋯Br hydrogen bond, and a thick solid line indicates a π-stacking centroid-to-centroid inter­action. CCDC reference: 1408281 Additional supporting information: crystallographic information; 3D view; checkCIF report
C7H4BrNOF(000) = 384
Mr = 198.02Dx = 1.941 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 13.0171 (7) ÅCell parameters from 6401 reflections
b = 3.8488 (2) Åθ = 3.0–30.5°
c = 13.5989 (7) ŵ = 5.98 mm1
β = 96.062 (1)°T = 125 K
V = 677.50 (6) Å3Needle, colourless
Z = 40.22 × 0.10 × 0.04 mm
Bruker APEXII CCD diffractometer1977 independent reflections
Radiation source: fine-focus sealed tube1776 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 8.3333 pixels mm-1θmax = 30.0°, θmin = 3.0°
φ and ω scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −5→5
Tmin = 0.57, Tmax = 0.80l = −19→19
9903 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: mixed
wR(F2) = 0.049H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0241P)2 + 0.2328P] where P = (Fo2 + 2Fc2)/3
1977 reflections(Δ/σ)max = 0.002
110 parametersΔρmax = 0.37 e Å3
102 restraintsΔρmin = −0.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.70927 (9)0.4093 (4)0.76425 (9)0.0264 (3)
H10.6483 (13)0.420 (6)0.7450 (18)0.04*
C10.66122 (12)0.6091 (4)0.92251 (12)0.0195 (3)
C70.5648 (2)0.7338 (8)0.8786 (2)0.0225 (6)0.9272 (13)
N10.4862 (2)0.8421 (7)0.84343 (18)0.0281 (5)0.9272 (13)
Br1A0.5216 (4)0.7707 (10)0.8684 (3)0.0332 (13)0.0728 (13)
C20.73013 (11)0.4575 (4)0.86256 (11)0.0185 (3)
C30.82692 (11)0.3564 (4)0.90818 (11)0.0186 (3)
Br10.92397 (2)0.15982 (5)0.82834 (2)0.02008 (6)0.9272 (13)
C7A0.8979 (14)0.192 (6)0.8577 (15)0.02008 (6)0.0728 (13)
N1A0.9658 (13)0.131 (5)0.8138 (13)0.02008 (6)0.0728 (13)
C40.85334 (13)0.3982 (4)1.00854 (12)0.0234 (3)
H40.91940.32591.03760.028*
C50.78350 (14)0.5460 (5)1.06728 (12)0.0267 (3)
H50.80170.57391.13630.032*
C60.68739 (13)0.6519 (4)1.02446 (12)0.0237 (3)
H60.63940.75321.0640.028*
U11U22U33U12U13U23
O10.0175 (5)0.0414 (7)0.0194 (5)0.0021 (5)−0.0026 (4)−0.0046 (5)
C10.0174 (7)0.0191 (7)0.0216 (7)−0.0012 (5)0.0008 (6)0.0021 (6)
C70.0186 (12)0.0255 (11)0.0237 (10)0.0015 (11)0.0044 (11)−0.0002 (7)
N10.0217 (12)0.0369 (13)0.0253 (11)0.0038 (9)0.0012 (8)0.0005 (9)
Br1A0.029 (3)0.031 (2)0.040 (2)0.001 (2)0.003 (2)−0.0004 (15)
C20.0173 (7)0.0186 (7)0.0190 (7)−0.0024 (6)−0.0007 (5)0.0016 (6)
C30.0161 (6)0.0173 (7)0.0224 (7)−0.0009 (6)0.0012 (5)0.0015 (6)
Br10.01502 (9)0.02106 (9)0.02437 (10)0.00176 (7)0.00305 (6)−0.00176 (7)
C7A0.01502 (9)0.02106 (9)0.02437 (10)0.00176 (7)0.00305 (6)−0.00176 (7)
N1A0.01502 (9)0.02106 (9)0.02437 (10)0.00176 (7)0.00305 (6)−0.00176 (7)
C40.0198 (7)0.0252 (8)0.0241 (8)−0.0006 (6)−0.0037 (6)0.0047 (6)
C50.0290 (8)0.0325 (9)0.0176 (7)−0.0004 (7)−0.0023 (6)0.0027 (7)
C60.0236 (8)0.0265 (8)0.0215 (7)−0.0004 (6)0.0043 (6)0.0003 (7)
O1—C21.3487 (19)C3—C41.381 (2)
O1—H10.810 (16)C3—Br11.9071 (16)
C1—C21.401 (2)C7A—N1A1.143 (16)
C1—C61.402 (2)C4—C51.393 (2)
C1—C71.416 (3)C4—H40.95
C1—Br1A1.988 (5)C5—C61.384 (2)
C7—N11.161 (4)C5—H50.95
C2—C31.400 (2)C6—H60.95
C3—C7A1.363 (14)
C2—O1—H1113.7 (18)C4—C3—Br1119.86 (12)
C2—C1—C6121.38 (14)C2—C3—Br1118.52 (11)
C2—C1—C7119.29 (17)N1A—C7A—C3164 (3)
C6—C1—C7119.28 (17)C3—C4—C5120.30 (15)
C2—C1—Br1A122.09 (17)C3—C4—H4119.9
C6—C1—Br1A116.52 (16)C5—C4—H4119.9
N1—C7—C1178.7 (4)C6—C5—C4119.63 (15)
O1—C2—C3118.60 (14)C6—C5—H5120.2
O1—C2—C1124.04 (14)C4—C5—H5120.2
C3—C2—C1117.35 (14)C5—C6—C1119.71 (16)
C7A—C3—C4116.1 (9)C5—C6—H6120.1
C7A—C3—C2122.2 (9)C1—C6—H6120.1
C4—C3—C2121.62 (15)
C6—C1—C2—O1179.94 (15)C1—C2—C3—Br1−178.46 (11)
C7—C1—C2—O1−2.6 (3)C4—C3—C7A—N1A−88 (8)
Br1A—C1—C2—O10.4 (3)C2—C3—C7A—N1A96 (8)
C6—C1—C2—C3−1.2 (2)C7A—C3—C4—C5−176.5 (12)
C7—C1—C2—C3176.33 (18)C2—C3—C4—C5−0.4 (2)
Br1A—C1—C2—C3179.33 (18)Br1—C3—C4—C5179.11 (13)
O1—C2—C3—C7A−4.1 (13)C3—C4—C5—C6−0.2 (3)
C1—C2—C3—C7A176.9 (13)C4—C5—C6—C10.1 (3)
O1—C2—C3—C4−179.97 (15)C2—C1—C6—C50.6 (2)
C1—C2—C3—C41.1 (2)C7—C1—C6—C5−176.89 (19)
O1—C2—C3—Br10.5 (2)Br1A—C1—C6—C5−179.86 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.81 (2)2.04 (2)2.810 (3)159 (2)
O1—H1···Br1A0.81 (2)2.82 (2)3.262 (5)116 (2)
O1—H1···Br1Ai0.81 (2)2.62 (2)3.379 (5)156 (2)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1N1i 0.81(2)2.04(2)2.810(3)159(2)
O1H1Br1A 0.81(2)2.82(2)3.262(5)116(2)
O1H1Br1A i 0.81(2)2.62(2)3.379(5)156(2)

Symmetry code: (i) .

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