| Literature DB >> 26279884 |
Matthew J Montgomery1, Thomas J O'Connor1, Joseph M Tanski1.
Abstract
The two title compounds are isomers of C6H3ClN2 containing aEntities:
Keywords: C—H⋯N interactions; chlorocyanopyridine; crystal structure; π-stacking
Year: 2015 PMID: 26279884 PMCID: PMC4518955 DOI: 10.1107/S2056989015011767
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of 4-chloropyridine-2-carbonitrile, (I), with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level.
Figure 2A view of 6-chloropyridine-2-carbonitrile, (II), with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level.
Figure 3A view of the intermolecular C—H⋯Nnitrile and C—H⋯Npyridine contacts (dashed lines) in 4-chloropyridine-2-carbonitrile, (I), that form a one-dimensional chain. [Symmetry codes: (i) −x − 1, −y + 1, −z; (ii) −x, −y + 1, −z + 1.]
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3 | 0.95 | 2.64 | 3.462 (5) | 146 |
| C6—H6 | 0.95 | 2.75 | 3.493 (5) | 136 |
Symmetry codes: (i) ; (ii) .
Figure 4A view of the offset face-to-face π-stacking in 4-chloropyridine-2-carbonitrile, (I), with the thick dashed line indicating a centroid-to-centroid interaction. [Symmetry code: (i) x + 1, y, z.]
Figure 5A view of the intermolecular C—H⋯Nnitrile and C—H⋯Npyridine contacts (dashed lines) in 6-chloropyridine-2-carbonitrile, (I), that form a two-dimensional sheet. [Symmetry codes: (i) x − 1, y, z; (ii) −x + , y − , −z + .]
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4 | 0.95 | 2.49 | 3.4099 (15) | 164 |
| C5—H5 | 0.95 | 2.70 | 3.5651 (17) | 152 |
Symmetry codes: (i) ; (ii) .
Figure 6A view of the alternating offset face-to-face π-stacking in 6-chloropyridine-2-carbonitrile, (II), with the thick dashed line indicating a centroid-to-centroid interaction. [Symmetry code: (i) x + , −y + , z + .]
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C6H3ClN2 | C6H3ClN2 |
|
| 138.55 | 138.55 |
| Crystal system, space group | Monoclinic, | Monoclinic, |
| Temperature (K) | 125 | 125 |
|
| 3.813 (5), 14.047 (19), 11.356 (15) | 6.1739 (15), 15.238 (4), 7.0123 (18) |
| β (°) | 96.806 (19) | 112.492 (4) |
|
| 604.0 (14) | 609.5 (3) |
|
| 4 | 4 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 0.52 | 0.52 |
| Crystal size (mm) | 0.25 × 0.10 × 0.04 | 0.20 × 0.15 × 0.03 |
| Data collection | ||
| Diffractometer | Bruker APEXII CCD | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.67, 0.98 | 0.82, 0.98 |
| No. of measured, independent and observed [ | 12191, 1852, 1498 | 15460, 1868, 1657 |
|
| 0.063 | 0.031 |
| (sin θ/λ)max (Å−1) | 0.715 | 0.717 |
| Refinement | ||
|
| 0.050, 0.135, 1.12 | 0.028, 0.082, 1.09 |
| No. of reflections | 1852 | 1868 |
| No. of parameters | 82 | 82 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.53, −0.37 | 0.48, −0.19 |
Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXS2014 and SHELXTL2014 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2008 ▸).
| C6H3ClN2 | |
| Monoclinic, | Mo |
| Cell parameters from 3637 reflections | |
| θ = 2.9–30.3° | |
| µ = 0.52 mm−1 | |
| β = 96.806 (19)° | |
| Plate, colourless | |
| 0.25 × 0.10 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 1852 independent reflections |
| Radiation source: fine-focus sealed tube | 1498 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 30.6°, θmin = 2.3° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 12191 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1852 reflections | Δρmax = 0.53 e Å−3 |
| 82 parameters | Δρmin = −0.37 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cl | 0.27576 (14) | 0.79489 (4) | 0.15624 (5) | 0.02207 (17) | |
| N1 | 0.0055 (5) | 0.52050 (12) | 0.33977 (16) | 0.0197 (4) | |
| N2 | −0.4067 (5) | 0.39592 (13) | 0.09730 (18) | 0.0253 (4) | |
| C1 | −0.2642 (5) | 0.45592 (15) | 0.15388 (19) | 0.0204 (4) | |
| C2 | −0.0811 (5) | 0.53460 (14) | 0.22134 (18) | 0.0173 (4) | |
| C3 | −0.0084 (5) | 0.61731 (14) | 0.15971 (18) | 0.0177 (4) | |
| H3A | −0.0758 | 0.6235 | 0.0768 | 0.021* | |
| C4 | 0.1688 (5) | 0.69050 (13) | 0.22646 (18) | 0.0163 (4) | |
| C5 | 0.2634 (5) | 0.67930 (15) | 0.34888 (18) | 0.0192 (4) | |
| H5A | 0.383 | 0.7283 | 0.3953 | 0.023* | |
| C6 | 0.1748 (6) | 0.59298 (15) | 0.40037 (19) | 0.0207 (4) | |
| H6A | 0.2382 | 0.5851 | 0.4832 | 0.025* |
| Cl | 0.0217 (3) | 0.0212 (3) | 0.0227 (3) | −0.00411 (18) | 0.00040 (18) | 0.00357 (18) |
| N1 | 0.0200 (8) | 0.0197 (8) | 0.0191 (9) | 0.0004 (6) | 0.0016 (7) | 0.0014 (7) |
| N2 | 0.0261 (9) | 0.0245 (9) | 0.0247 (10) | −0.0046 (7) | 0.0003 (8) | −0.0011 (7) |
| C1 | 0.0176 (9) | 0.0218 (9) | 0.0216 (10) | 0.0002 (7) | 0.0019 (8) | 0.0027 (8) |
| C2 | 0.0141 (8) | 0.0180 (9) | 0.0199 (10) | 0.0012 (7) | 0.0021 (7) | −0.0016 (7) |
| C3 | 0.0161 (9) | 0.0217 (9) | 0.0153 (9) | −0.0004 (7) | 0.0020 (7) | −0.0001 (7) |
| C4 | 0.0144 (8) | 0.0169 (8) | 0.0180 (9) | 0.0012 (7) | 0.0032 (7) | 0.0018 (7) |
| C5 | 0.0185 (9) | 0.0201 (9) | 0.0185 (10) | 0.0003 (7) | 0.0002 (8) | −0.0024 (7) |
| C6 | 0.0236 (10) | 0.0230 (10) | 0.0152 (9) | 0.0012 (8) | 0.0020 (8) | −0.0004 (7) |
| Cl—C4 | 1.740 (3) | C3—C4 | 1.402 (3) |
| N1—C6 | 1.350 (3) | C3—H3A | 0.95 |
| N1—C2 | 1.361 (3) | C4—C5 | 1.403 (3) |
| N2—C1 | 1.156 (3) | C5—C6 | 1.405 (3) |
| C1—C2 | 1.473 (3) | C5—H5A | 0.95 |
| C2—C3 | 1.401 (3) | C6—H6A | 0.95 |
| C6—N1—C2 | 116.07 (19) | C3—C4—Cl | 119.61 (18) |
| N2—C1—C2 | 177.6 (2) | C5—C4—Cl | 120.11 (16) |
| N1—C2—C3 | 125.12 (19) | C4—C5—C6 | 117.58 (19) |
| N1—C2—C1 | 116.70 (19) | C4—C5—H5A | 121.2 |
| C3—C2—C1 | 118.2 (2) | C6—C5—H5A | 121.2 |
| C2—C3—C4 | 116.7 (2) | N1—C6—C5 | 124.3 (2) |
| C2—C3—H3A | 121.7 | N1—C6—H6A | 117.9 |
| C4—C3—H3A | 121.7 | C5—C6—H6A | 117.9 |
| C3—C4—C5 | 120.27 (19) | ||
| C6—N1—C2—C3 | −0.1 (3) | C2—C3—C4—Cl | 178.93 (15) |
| C6—N1—C2—C1 | 179.66 (19) | C3—C4—C5—C6 | 0.1 (3) |
| N1—C2—C3—C4 | 0.3 (3) | Cl—C4—C5—C6 | −179.07 (16) |
| C1—C2—C3—C4 | −179.48 (18) | C2—N1—C6—C5 | −0.1 (3) |
| C2—C3—C4—C5 | −0.3 (3) | C4—C5—C6—N1 | 0.1 (3) |
| H··· | ||||
| C3—H3 | 0.95 | 2.64 | 3.462 (5) | 146 |
| C6—H6 | 0.95 | 2.75 | 3.493 (5) | 136 |
| C6H3ClN2 | |
| Monoclinic, | Mo |
| Cell parameters from 9960 reflections | |
| θ = 2.7–30.5° | |
| µ = 0.52 mm−1 | |
| β = 112.492 (4)° | |
| Plate, colourless | |
| 0.20 × 0.15 × 0.03 mm |
| Bruker APEXII CCD diffractometer | 1868 independent reflections |
| Radiation source: fine-focus sealed tube | 1657 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 30.6°, θmin = 2.7° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 15460 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1868 reflections | Δρmax = 0.48 e Å−3 |
| 82 parameters | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cl | 1.01050 (5) | 0.09596 (2) | 0.82065 (4) | 0.02803 (10) | |
| N1 | 0.98012 (14) | 0.26545 (6) | 0.82258 (13) | 0.01720 (17) | |
| N2 | 1.10287 (19) | 0.47889 (7) | 0.79286 (18) | 0.0351 (2) | |
| C1 | 1.00059 (18) | 0.41966 (8) | 0.81170 (17) | 0.0232 (2) | |
| C2 | 0.87412 (16) | 0.34169 (7) | 0.83298 (15) | 0.01728 (19) | |
| C3 | 0.66223 (17) | 0.34787 (7) | 0.85770 (15) | 0.0198 (2) | |
| H3A | 0.5958 | 0.4032 | 0.8664 | 0.024* | |
| C4 | 0.55044 (17) | 0.26976 (8) | 0.86928 (16) | 0.0210 (2) | |
| H4A | 0.4041 | 0.271 | 0.8846 | 0.025* | |
| C5 | 0.65405 (17) | 0.19009 (7) | 0.85828 (15) | 0.0205 (2) | |
| H5A | 0.5818 | 0.1359 | 0.8659 | 0.025* | |
| C6 | 0.86897 (17) | 0.19295 (7) | 0.83550 (15) | 0.01759 (19) |
| Cl | 0.03124 (16) | 0.02096 (15) | 0.03084 (16) | 0.00422 (9) | 0.01070 (11) | −0.00400 (9) |
| N1 | 0.0135 (3) | 0.0212 (4) | 0.0168 (4) | −0.0004 (3) | 0.0058 (3) | −0.0014 (3) |
| N2 | 0.0343 (5) | 0.0294 (5) | 0.0430 (6) | −0.0068 (4) | 0.0164 (5) | 0.0013 (4) |
| C1 | 0.0207 (5) | 0.0237 (5) | 0.0250 (5) | 0.0006 (4) | 0.0085 (4) | −0.0006 (4) |
| C2 | 0.0148 (4) | 0.0199 (4) | 0.0167 (4) | −0.0007 (3) | 0.0055 (3) | −0.0001 (3) |
| C3 | 0.0154 (4) | 0.0238 (5) | 0.0204 (4) | 0.0035 (3) | 0.0071 (3) | 0.0010 (4) |
| C4 | 0.0135 (4) | 0.0317 (5) | 0.0187 (4) | −0.0012 (4) | 0.0072 (3) | 0.0010 (4) |
| C5 | 0.0182 (4) | 0.0246 (5) | 0.0186 (4) | −0.0051 (3) | 0.0068 (3) | 0.0004 (4) |
| C6 | 0.0175 (4) | 0.0193 (4) | 0.0151 (4) | 0.0004 (3) | 0.0052 (3) | −0.0012 (3) |
| Cl—C6 | 1.7402 (11) | C3—C4 | 1.3938 (15) |
| N1—C6 | 1.3218 (13) | C3—H3A | 0.95 |
| N1—C2 | 1.3490 (13) | C4—C5 | 1.3881 (16) |
| N2—C1 | 1.1378 (16) | C4—H4A | 0.95 |
| C1—C2 | 1.4604 (15) | C5—C6 | 1.3965 (14) |
| C2—C3 | 1.3870 (14) | C5—H5A | 0.95 |
| C6—N1—C2 | 116.15 (9) | C5—C4—H4A | 120.2 |
| N2—C1—C2 | 177.99 (12) | C3—C4—H4A | 120.2 |
| N1—C2—C3 | 124.44 (9) | C4—C5—C6 | 117.21 (9) |
| N1—C2—C1 | 113.94 (9) | C4—C5—H5A | 121.4 |
| C3—C2—C1 | 121.62 (9) | C6—C5—H5A | 121.4 |
| C2—C3—C4 | 117.46 (9) | N1—C6—C5 | 125.09 (9) |
| C2—C3—H3A | 121.3 | N1—C6—Cl | 114.83 (8) |
| C4—C3—H3A | 121.3 | C5—C6—Cl | 120.07 (8) |
| C5—C4—C3 | 119.65 (9) | ||
| C6—N1—C2—C3 | 0.62 (14) | C3—C4—C5—C6 | −0.07 (15) |
| C6—N1—C2—C1 | −178.24 (8) | C2—N1—C6—C5 | 0.12 (15) |
| N1—C2—C3—C4 | −1.03 (15) | C2—N1—C6—Cl | 179.80 (7) |
| C1—C2—C3—C4 | 177.74 (9) | C4—C5—C6—N1 | −0.38 (15) |
| C2—C3—C4—C5 | 0.71 (15) | C4—C5—C6—Cl | 179.96 (7) |
| H··· | ||||
| C4—H4 | 0.95 | 2.49 | 3.4099 (15) | 164 |
| C5—H5 | 0.95 | 2.70 | 3.5651 (17) | 152 |