| Literature DB >> 26279871 |
Abstract
Time-of-flight neutron powder diffraction data have been measured from ∼90 mol% deuterated isotopologues of Na2MoO4·2H2O and Na2WO4·2H2O at 295 K to a resolution of sin (θ)/λ = 0.77 Å(-1). The use of neutrons has allowed refinement of structural parameters with a precision that varies by a factor of two from the heaviest to the lightest atoms; this contrasts with the X-ray based refinements where precision may be > 20× poorer for O atoms in the presence of atoms such as Mo and W. The accuracy and precision of inter-atomic distances and angles are in excellent agreement with recent X-ray single-crystal structure refinements whilst also completing our view of the hydrogen-bond geometry to the same degree of statistical certainty. The two structures are isotypic, space-group Pbca, with all atoms occupying general positions, being comprised of edge- and corner-sharing NaO5 and NaO6 polyhedra that form layers parallel with (010) inter-leaved with planes of XO4 (X = Mo, W) tetra-hedra that are linked by chains of water mol-ecules along [100] and [001]. The complete structure is identical with the previously described molybdate [Capitelli et al. (2006 ▸). Asian J. Chem. 18, 2856-2860] but shows that the purported three-centred inter-action involving one of the water mol-ecules in the tungstate [Farrugia (2007 ▸). Acta Cryst. E63, i142] is in fact an ordinary two-centred 'linear' hydrogen bond.Entities:
Keywords: neutron powder diffraction; sodium molybdate dihydrate; sodium tungstate dihydrate
Year: 2015 PMID: 26279871 PMCID: PMC4518980 DOI: 10.1107/S2056989015011354
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Comparison of the XO (X = Mo, W) and NaO bond lengths () in Na2MoO42D2O and Na2WO42D2O with those of the protonated isotopologues reported in the literature
| Na2MoO42D2O | Na2MoO42H2O | Na2WO42D2O | Na2WO42H2O | |
|---|---|---|---|---|
| This work | Capitelli | This work | Farrugia (2007 | |
|
| 1.773(2) | 1.772(1) | 1.785(2) | 1.776(3) |
|
| 1.764(1) | 1.767(1) | 1.778(2) | 1.778(3) |
|
| 1.750(2) | 1.751(1) | 1.766(2) | 1.761(3) |
|
| 1.776(2) | 1.778(1) | 1.783(2) | 1.787(3) |
| Mean | 1.766 | 1.767 | 1.778 | 1.776 |
| Na1O2 | 2.437(3) | 2.446(2) | 2.433(2) | 2.442(3) |
| Na1O2(i) | 2.417(3) | 2.419(2) | 2.412(3) | 2.416(3) |
| Na1O3(ii) | 2.482(3) | 2.481(2) | 2.479(3) | 2.480(3) |
| Na1O4(iii) | 2.410(3) | 2.395(2) | 2.399(2) | 2.388(3) |
| Na1O5 | 2.476(3) | 2.456(2) | 2.479(3) | 2.464(4) |
| Na1O6 | 2.426(3) | 2.423(2) | 2.443(3) | 2.433(3) |
| Mean Na1O | 2.441 | 2.437 | 2.441 | 2.437 |
| Na2O1iv | 2.312(3) | 2.319(2) | 2.320(2) | 2.323(3) |
| Na2O2 | 2.363(3) | 2.354(2) | 2.355(2) | 2.346(3) |
| Na2O3v | 2.339(3) | 2.341(2) | 2.328(2) | 2.331(3) |
| Na2O5 | 2.415(3) | 2.403(2) | 2.409(3) | 2.396(3) |
| Na2O6vi | 2.305(3) | 2.300(2) | 2.311(2) | 2.304(3) |
| Mean Na2O | 2.347 | 2.343 | 2.345 | 2.340 |
Symmetry codes: (i) 1x, 1y, 1z; (ii) +x, y, 1z; (iii) x, +y, z; (iv) +x, y, 1z; (v) x, +y, z; (vi) +x, y, z.
Comparison of the water molecule and hydrogen bond geometry (, ) in Na2MoO42D2O and Na2WO42D2O with the protonated isotopologues as reported in the literature. Note the inclusion of the contact O5D51O3, which forms the longer ‘branch’ of Farrugia’s proposed bifurcated hydrogen bond
| Na2MoO42D2O | Na2MoO42H2O | Na2WO42D2O | Na2WO42H2O | |
|---|---|---|---|---|
| This work | Capitelli | This work | Farrugia (2007 | |
| O5D51 | 0.977(2) | 0.68(3) | 0.970(2) | 0.86(3) |
| O5D52 | 0.966(2) | 0.76(3) | 0.959(2) | 0.86(3) |
| D51O5D52 | 106.0(2) | 98(4) | 106.0(2) | 100(5) |
| D51O1(i) | 1.874(2) | 2.16(3) | 1.873(2) | 2.09(4) |
| O5D51O1(i) | 167.9(2) | 167(4) | 168.2(2) | 145(6) |
| D51O3(ii) | 2.70(6) | |||
| O5D51O3(ii) | 122(5) | |||
| D52O4(ii) | 1.846(3) | 2.07(3) | 1.863(2) | 1.98(3) |
| O5D52O4(ii) | 171.2(2) | 176(3) | 170.9(2) | 174(6) |
| O6D61 | 0.972(2) | 0.83(3) | 0.968(2) | 0.86(3) |
| O6D62 | 0.972(2) | 0.71(3) | 0.966(2) | 0.86(3) |
| D61O6D62 | 103.0(2) | 105(3) | 103.2(2) | 95(5) |
| D61O1 | 1.816(2) | 2.01(3) | 1.834(2) | 1.95(3) |
| O6D61O1 | 167.0(2) | 167(3) | 167.0(2) | 167(6) |
| D62O4(iii) | 1.868(4) | 2.08(3) | 1.876(2) | 2.02(4) |
| O6D62O4(iii) | 168.7(2) | 170(3) | 168.7(2) | 159(6) |
Symmetry codes: (i) 1x, 1y, 1z; (ii) 1x, +y, z; (iii) +x, y, 1z.
Figure 1First and second coordination shell of Mo6+/W6+ in the title compounds, revealing differences in the environment of each apical O2− that are responsible for the variations in Mo–O and W–O bond lengths. Anisotropic displacement ellipsoids are drawn at the 50% probability level. [Symmetry codes: (i) 1 − x, 1 − y, 1 − z; (ii) + x, − y, 1 − z; (iii) − + x, − y, 1 − z; (iv) − x, + y, z; (v) − x, + y, z; (vi) 1 − x, + y, 1.5 − z.]
Figure 2(a) Arrangement of NaO polyhedra into edge-sharing clusters comprised of two Na1O6 octahedra and two Na2O5 square pyramids; (b) Arrangement of the clusters shown in (a) by corner sharing to form ‘slabs’ parallel (010). Ellipsoids are drawn at the 50% probability level. [Symmetry codes: (i) 1 − x, 1 − y, 1 − z; (ii) + x, − y, 1 − z; (iii) − + x, − y, 1 − z; (iv) − x, − + y, z; (v) + x, y, − z; (vi) − x, 1 − y, + z; (vii) − x, − + y, z.]
Figure 3(a) View down the b axis of the network of water-linked tetrahedral oxyanions; chains linked by O5 extend along [001] whereas crosslinkages through O6 are staggered along [100]. (b) View of the same structure along the c axis. Ellipsoids are drawn at the 50% probability level. [Symmetry codes: (i) 1 − x, 1 − y, 1 − z; (ii) 1 − x, + y, − z; (iii) + x, − y, 1 − z; (iv) + x, y, − z; (v) x, − y, − + z; (vi) x, − y, + z.]
Figure 4Raman spectra of Na2MoO4·2H2O and Na2MoO4·2D2O in the range 200–3900 cm−1. Band positions and vibrational assignments are indicated (see also Table 3 ▸). Vertical scales show intensities relative to ν1 (XO4 2−).
Figure 5Raman spectra of Na2WO4·2H2O and Na2WO4·2D2O in the range 200–3900 cm−1. Band positions and vibrational assignments are indicated (see also Table 3 ▸). Vertical scales show intensities relative to ν1 (XO4 2−).
Comparison of the internal vibrational mode frequencies (cm1) in fully protonated and 90mol % deuterated isotopologues of Na2MoO42H2O and Na2WO42H2O with literature data
| Na2MoO42H2O | Na2WO42H2O | |||||
|---|---|---|---|---|---|---|
| This work (1H) | This work (2D) | Busey Keller (1964 | This work (1H) | This work (2D) | Busey Keller (1964 | |
|
2 ( | 279 | 271 | 285 | 276 | 269 | 276 |
| 319 | 315 | 325 | 324 | 321 | 325 | |
| 335 | 331 | 330 | 331 | |||
|
4 ( | 359 | 358 | 358 | 355 | ||
|
3 ( | 804 | 801 | 805 | 804 | 802 | 808 |
| 833 | 826 | 836 | 836 | 831 | 838 | |
| 842 | 840 | 843 | 840 | |||
|
1 ( | 891 | 889 | 893 | |||
| 894 | 894 | 897 | 929 | 928 | 931 |
Figure 6Neutron powder diffraction data for Na2MoO4·2D2O; red points are the observations, the green line is the calculated profile and the pink line beneath the diffraction pattern represents Obs−Calc. Vertical black tick marks report the expected positions of the Bragg peaks. The inset shows the data measured at short flight times (i.e. small d-spacings).
Figure 7Neutron powder diffraction data for Na2WO4·2D2O; red points are the observations, the green line is the calculated profile and the pink line beneath the diffraction pattern represents Obs−Calc. Vertical black tick marks report the expected positions of the Bragg peaks. The inset shows the data measured at short flight times (i.e. small d-spacings).
Experimental details
| Na2MoO42D2O | Na2WO42D2O | |
|---|---|---|
| Crystal data | ||
| Chemical formula | Na2MoO42D2O | Na2WO42D2O |
|
| 245.99 | 333.87 |
| Crystal system, space group | Orthorhombic, | Orthorhombic, |
| Temperature (K) | 295 | 295 |
|
| 8.482961(14), 10.566170(17), 13.83195(3) | 8.482514(15), 10.595156(19), 13.85640(3) |
|
| 1239.79(1) | 1245.32(1) |
|
| 8 | 8 |
| Radiation type | Neutron | Neutron |
| (mm1) | 0.03 + 0.0007 * | 0.03 + 0.0033 * |
| Specimen shape, size (mm) | Cylinder, 38 11 | Cylinder, 50 11 |
| Data collection | ||
| Diffractometer | HRPD, High resolution neutron powder | HRPD, High resolution neutron powder |
| Specimen mounting | Vanadium tube | Vanadium tube |
| Data collection mode | Transmission | Transmission |
| Scan method | Time of flight | Time of flight |
| Absorption correction | Analytical [data were corrected for self shielding using scatt = 93.812 barns and ab() = 3.657 barns at 1.798 during the normalization procedure. The linear absorption coefficient is wavelength dependent and is calculated as: = 0.0308 + 0.0007 * (mm1)] | analytical [data were corrected for self shielding using scatt = 94.190 barns and ab() = 19.484 barns at 1.798 during the normalization procedure. The linear absorption coefficient is wavelength dependent and is calculated as: = 0.0284 + 0.0033 * (mm1)] |
|
| 0.685, 0.706 | 0.700, 0.603 |
| 2 values () | 2fixed = 168.329 | 2fixed = 168.329 |
| Distance from source to specimen (mm) | 95000 | 95000 |
| Distance from specimen to detector (mm) | 965 | 965 |
| Refinement | ||
|
|
|
|
| No. of data points | 4610 | 4610 |
| No. of parameters | 133 | 133 |
Computer programs: HRPD control software, GSAS/Expgui (Larsen Von Dreele, 2000 ▸: Toby, 2001 ▸), Mantid (Arnold et al., 2014 ▸: Mantid, 2013 ▸), DIAMOND (Putz Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| Na2WO4·2D2O | |
| Melting point: 373 K | |
| Orthorhombic, | Neutron radiation |
| Hall symbol: -P 2ac 2ab | µ = 0.03+ 0.0033 * λ mm−1 |
| white | |
| cylinder, 50 × 11 mm | |
| Specimen preparation: Prepared at 323 K and 100 kPa | |
| HRPD, High resolution neutron powder diffractometer | Absorption correction: analytical Data were corrected for self shielding using σscatt = 94.190 barns and σab(λ) = 19.484 barns at 1.798 Å during the normalisation procedure. The linear absorption coefficient is wavelength dependent and is calculated as: µ = 0.0284 + 0.0033 * λ [mm-1] |
| Radiation source: ISIS Facility, Neutron spallation source | |
| Specimen mounting: vanadium tube | 2θfixed = 168.329 |
| Data collection mode: transmission | Distance from source to specimen: 95000 mm |
| Scan method: time of flight | Distance from specimen to detector: 965 mm |
| Least-squares matrix: full | Excluded region(s): none |
| Profile function: TOF profile function #3 (21 terms). Profile coefficients for exp pseudovoigt convolution [Von Dreele, 1990 (unpublished)] (α) = 0.1414, (β0) = 0.026250, (β1) = 0.004690, (σ0) = 0, (σ1) = 322.9, (σ2) = 15.7, (γ0) = 0, (γ1) = 0, (γ2) = 0, (γ2s) = 0, (γ1e) = 0, (γ2e) = 0, (εi) = 0, (εa) = 0, (εA) = 0, (γ11) = 0.023, (γ22) = 0, (γ33) = 0.006, (γ12) = 0.050, (γ13) = 0.016, (γ23) = 0.017. Peak tails ignored where intensity <0.0010x peak. Aniso. broadening axis 0.0 0.0 1.0 | |
| 133 parameters | |
| 0 restraints | |
| 0 constraints | |
| χ2 = 3.312 | (Δ/σ)max = 0.04 |
| 4610 data points | Background function: GSAS Background function number 1 with 12 terms. Shifted Chebyshev function of 1st kind 1: 3.91163, 2: 1.22805, 3: -0.206144, 4: -8.53351x10-2, 5: -9.966470x10-2, 6: -1.847470x10-2, 7: -1.38195x10-2, 8: 9.956170x10-4, 9: 4.49839x10-3, 10: -2.199010x10-2, 11: 2.57524x10-2, 12: -2.00574x10-3 |
| W1 | 0.51352 (13) | 0.80186 (10) | 0.52310 (10) | 0.01206 | |
| Na1 | 0.3444 (2) | 0.4957 (2) | 0.58501 (16) | 0.02213 | |
| Na2 | 0.7422 (2) | 0.54966 (18) | 0.64745 (14) | 0.02166 | |
| O1 | 0.44940 (14) | 0.82253 (11) | 0.40144 (8) | 0.01858 | |
| O2 | 0.55647 (14) | 0.63936 (9) | 0.54135 (9) | 0.01675 | |
| O3 | 0.68666 (14) | 0.89213 (10) | 0.53870 (10) | 0.02256 | |
| O4 | 0.36916 (14) | 0.85058 (11) | 0.60895 (9) | 0.01972 | |
| O5 | 0.53794 (17) | 0.40814 (14) | 0.70116 (12) | 0.02505 | |
| O6 | 0.2276 (2) | 0.64134 (14) | 0.70148 (11) | 0.02531 | |
| D51 | 0.5576 (2) | 0.32926 (17) | 0.66767 (12) | 0.03829 | |
| D52 | 0.55912 (18) | 0.39189 (14) | 0.76800 (13) | 0.03325 | |
| D61 | 0.1229 (2) | 0.64645 (13) | 0.67384 (10) | 0.03267 | |
| D62 | 0.27774 (17) | 0.71764 (15) | 0.67874 (12) | 0.03524 |
| W1 | 0.0099 (7) | 0.0064 (6) | 0.0199 (7) | −0.0002 (5) | 0.0009 (6) | 0.0002 (6) |
| Na1 | 0.0209 (11) | 0.0167 (9) | 0.0289 (13 | 0.0004 (9) | 0.0028 (9) | 0.0003 (8) |
| Na2 | 0.0192 (10) | 0.0183 (11) | 0.0275 (13) | 0.0001 (8) | −0.0006 (8) | 0.0000 (9) |
| O1 | 0.0170 (6) | 0.0192 (6) | 0.0195 (7) | 0.0008 (5) | 0.0010 (6) | 0.0031 (5) |
| O2 | 0.0176 (6) | 0.0079 (5) | 0.0248 (7) | 0.0014 (5) | −0.0004 (5) | 0.0035 (5) |
| O3 | 0.0193 (7) | 0.0190 (6) | 0.0293 (8) | −0.0083 (5) | −0.0002 (6) | −0.0015 (6) |
| O4 | 0.0201 (6) | 0.0176 (6) | 0.0214 (7) | 0.0045 (5) | 0.0052 (6) | 0.0008 (6) |
| O5 | 0.0305 (9) | 0.0206 (9) | 0.0241 (8) | −0.0027 (7) | −0.0031 (7) | −0.0023 (7) |
| O6 | 0.0246 (8) | 0.0247 (8) | 0.0266 (9) | −0.0004 (7) | −0.0046 (7) | 0.0061 (7) |
| D51 | 0.0448 (10) | 0.0304 (9) | 0.0397 (9) | −0.0001 (8) | −0.0104 (8) | −0.0032 (8) |
| D52 | 0.0415 (9) | 0.0323 (8) | 0.0259 (8) | −0.0027 (7) | −0.0001 (8) | 0.0004 (7) |
| D61 | 0.0259 (9) | 0.0354 (9) | 0.0367 (9) | −0.0011 (7) | −0.0030 (7) | 0.0046 (8) |
| D62 | 0.0347 (9) | 0.0270 (8) | 0.0440 (11) | −0.0059 (7) | −0.0029 (7) | 0.0059 (7) |
| W1—O1 | 1.7849 (19) | Na2—O3v | 2.328 (2) |
| W1—O2 | 1.7779 (15) | Na2—O5 | 2.409 (3) |
| W1—O3 | 1.7659 (17) | Na2—O6vi | 2.311 (2) |
| W1—O4 | 1.7834 (18) | O5—D51 | 0.9702 (18) |
| Na1—O2 | 2.433 (2) | O5—D52 | 0.9591 (16) |
| Na1—O2i | 2.412 (3) | O6—D61 | 0.9684 (16) |
| Na1—O3ii | 2.479 (3) | O6—D62 | 0.9664 (16) |
| Na1—O4iii | 2.399 (2) | D51—O1i | 1.873 (2) |
| Na1—O5 | 2.479 (3) | D52—O4vii | 1.863 (2) |
| Na1—O6 | 2.443 (3) | D61—O1ii | 1.834 (2) |
| Na2—O1iv | 2.320 (2) | D62—O4 | 1.876 (2) |
| Na2—O2 | 2.355 (2) | ||
| O1—W1—O2 | 108.40 (9) | O2i—Na1—O6 | 174.55 (12) |
| O1—W1—O3 | 107.61 (8) | O4iii—Na1—O5 | 99.82 (9) |
| O1—W1—O4 | 112.66 (8) | O4iii—Na1—O6 | 90.40 (8) |
| O2—W1—O3 | 109.67 (7) | O5—Na1—O6 | 94.37 (10) |
| O2—W1—O4 | 109.03 (9) | O1iv—Na2—O2 | 95.10 (8) |
| O3—W1—O4 | 109.43 (9) | O1iv—Na2—O3v | 91.90 (8) |
| O2—Na1—O2i | 86.16 (7) | O1iv—Na2—O5 | 176.73 (11) |
| O2—Na1—O3ii | 85.82 (8) | O1iv—Na2—O6vi | 93.43 (9) |
| O2—Na1—O4iii | 173.55 (11) | O2—Na2—O3v | 93.36 (8) |
| O2—Na1—O5 | 84.60 (8) | O2—Na2—O5 | 87.87 (7) |
| O2—Na1—O6 | 93.95 (9) | O2—Na2—O6vi | 111.09 (9) |
| O3ii—Na1—O2i | 88.32 (8) | O3v—Na2—O5 | 86.57 (8) |
| O3ii—Na1—O4iii | 89.72 (8) | O3v—Na2—O6vi | 154.35 (11) |
| O3ii—Na1—O5 | 170.42 (10) | O5—Na2—O6vi | 86.74 (9) |
| O3ii—Na1—O6 | 86.26 (8) | D51—O5—D52 | 105.96 (19) |
| O2i—Na1—O4iii | 89.05 (8) | D61—O6—D62 | 103.18 (19) |
| O2i—Na1—O5 | 91.07 (9) |